Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27920 91 / 1e-19 F-box family protein (.1) AT4G15475 79 / 7e-16 F-box/RNI-like superfamily protein (.1) AT3G58530 77 / 2e-15 RNI-like superfamily protein (.1) AT5G25350 72 / 2e-13 EBF2 EIN3-binding F box protein 2 (.1) AT1G21410 67 / 4e-12 SKP2A F-box/RNI-like superfamily protein (.1) AT2G25490 67 / 4e-12 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G77000 63 / 9e-11 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G01720 61 / 6e-10 RNI-like superfamily protein (.1) AT5G23340 59 / 2e-09 RNI-like superfamily protein (.1) AT3G07550 56 / 2e-08 RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012764 [exp] 83 / 6e-17 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10015980 [exp] 77 / 2e-15 AT3G58530 442 / 4e-156 RNI-like superfamily protein (.1) Lus10012294 [exp] 76 / 4e-15 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10040998 [exp] 72 / 1e-13 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 72 / 1e-13 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10001264 [exp] 67 / 6e-12 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10034013 [exp] 66 / 2e-11 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10002913 [exp] 66 / 2e-11 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10025751 [exp] 66 / 2e-11 AT1G15740 660 / 0.0 Leucine-rich repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238300 [exp] 419 / 8e-147 AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1) Potri.006G195800 [exp] 87 / 6e-19 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 81 / 2e-16 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.018G027700 [exp] 76 / 1e-14 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.019G123400 [exp] 76 / 1e-14 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 72 / 1e-13 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 72 / 1e-13 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G022600 [exp] 72 / 1e-13 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.005G185700 [exp] 67 / 4e-12 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.006G105400 [exp] 64 / 7e-11 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011626 pacid=23150935 polypeptide=Lus10011626 locus=Lus10011626.g ID=Lus10011626.BGIv1.0 annot-version=v1.0 ATGCCGGAACTCAGCGACGATGAAGTCGCATCCATCCTCAAATGGACTGACGGCGATCCAAGCTTAAGAAAAACCTTCTCTCTGGTTTGCAAGCAATGGC TTCGGGTCGAGGGCAGTACTCGCTTATCCATTCGGGTTCTCGACCCTGATCTCCTTTTCAATTTCTTGCCCAGGTTCCCAAACTTGATCACATTTGAATC TACTAAACTGCTTTTAGATTCCCATCTTGAATTCGTCGCAACTTCATGCCCCAAAATCGAGGTCCTGAATCTCACTCTCAAGCAGTCCACCGAGAGTCGA TTTTACGATGGGAATGATGAAATTCTGACTTCTGCAGCTGATGTTGGGGATCGTGGGATTTGTGCCCTAGCAAGCGGGTGTTCCAGCTTGACGAAAGTTG TATTAAGACGGAGAGCTAATGTTGGAAATGTCGGAGTTACACATCTAGTGAATTGTGCTCGAAACTTAACCAGCTTGGATTTGGGTTGGTGCAGTTTGAT TGATGATCGGTCTGTTGAAGCAATCAGTTGGCTGAATTCGATTAGGGTTCTGAATTTGGAAGGCTGTTCGTTGATCACAGATCGGGGACTCAGTTATTTG GCTTCAAATTCTTCCTCCAGAACATTGAAGAGGTTGATTGTCGCCGACTGTGATAGGATAACAGATTTTGGTGTGTCCCTCTTGCATCAAATTCAGTGTT TGGAGGAGTTGAATTTGGCTGAATGTGGGCCTAAGGTGACCGATAACGGATGCATGGTGTTAGCCTCAATCTCAAGTATTAAAAGACTCAACTTTTCGTG GTTGATCAATGTTACAGATATTGCAGTTGTTGCTATAGCTGAAAATTGCAGGGAGCTGAAGGTGTTGGATCTCACTGGCTGTGAATTGATCACCGGAGTT GGAGTTCGTGCTTTTGCTAGACATGAGTGTCTGGAATCGCTGGTTCTGTCTTCCTGTCACAATATTCTTAATGATGATCTTAGTTTGTTGATGAACTGTA AGTCATTGAAGTGCCTAGTGCTTGCTAGAGGTTTGAGAATGTGGATAAATCCTGGATTGTTGGAGAACATTGGTAGACGTTGTGATTTGCATTGGAGATG A
AA sequence Show only first row Show all	>Lus10011626 pacid=23150935 polypeptide=Lus10011626 locus=Lus10011626.g ID=Lus10011626.BGIv1.0 annot-version=v1.0 MPELSDDEVASILKWTDGDPSLRKTFSLVCKQWLRVEGSTRLSIRVLDPDLLFNFLPRFPNLITFESTKLLLDSHLEFVATSCPKIEVLNLTLKQSTESR FYDGNDEILTSAADVGDRGICALASGCSSLTKVVLRRRANVGNVGVTHLVNCARNLTSLDLGWCSLIDDRSVEAISWLNSIRVLNLEGCSLITDRGLSYL ASNSSSRTLKRLIVADCDRITDFGVSLLHQIQCLEELNLAECGPKVTDNGCMVLASISSIKRLNFSWLINVTDIAVVAIAENCRELKVLDLTGCELITGV GVRAFARHECLESLVLSSCHNILNDDLSLLMNCKSLKCLVLARGLRMWINPGLLENIGRRCDLHWR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27920			F-box family protein (.1)		Lus10011626 [exp]	0	1
AT4G00755			F-box family protein (.1.2)		Lus10038879 [exp]	12.0	0.5746
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10015119 [exp]	19.6	0.5783
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10020685 [exp]	20.2	0.5675
AT1G15780			unknown protein		Lus10025451 [exp]	33.6	0.5310
AT2G30690			Protein of unknown function, D...		Lus10033854 [exp]	44.5	0.5222
AT2G34930			disease resistance family prot...		Lus10002753 [exp]	135.7	0.4506
AT2G28310			Protein of unknown function (D...		Lus10021463 [exp]	152.6	0.4467
AT4G32600			RING/U-box superfamily protein...		Lus10013144 [exp]	155.7	0.4430

Compare expression of checked genes

Lus10011626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.