Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25830 322 / 2e-110 YebC-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038722 [exp] 389 / 2e-136 AT2G25830 412 / 1e-144 YebC-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238400 [exp] 337 / 3e-116 AT2G25830 410 / 4e-144 YebC-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01709 [flax] [poplar] Transcrip_reg Transcriptional regulator
Representative CDS sequence Show only first row Show all	>Lus10011628 pacid=23150927 polypeptide=Lus10011628 locus=Lus10011628.g ID=Lus10011628.BGIv1.0 annot-version=v1.0 ATGAGATTGGTGGGTACAGTTCTTCATAGGTTCTCAGTTGGCTTCTCCTCCAAACTCCCAAGCACCATCTCCCCGATTCCTTATCCAACTTCCCCAGTTT CTACAGATTGTGATCCTCCTTTGCGATACAGTGTGAAGAAAGGTGGTCCAAATCCAGTTTCAAATAGAGTCCTTGCTGCAGTACTTGACAAAGACAAGGA GCTTGATGTACCCAAGGAAATTTTGGAGAGGAACATGAAGAGGGCTTCTGAGAAGGGACAGGAGGCTTACATCGAGAAAATTTACGAGGTTTATGGCTAT GGAGGAGTTAGCATGGTTGTGGAAGGATTGACAGATAAAGTAAATAGATCTGTGGCAGCTATTAGGGAGGTGGTGAAGGACTATGGGGGAAAGATGGCTG ATTCTGGGTCTGTTATGTTCAAATTTCGACGTGCCCGGGTTGTGAATGTGAAAGTAACAGATGCTGATAAAGATCAGTTGCTTGATATTGCCTTAGATGC TGGTGCTGAGGATGTTATTGAACCTTCAATCTATGAGGATGACTCGGATGAAGATAGGGCACAAAGCTGCTATAAAATCGTCAGTGATATGGATAACTAT GCAGCCATATTATCGAAGCTCCGTGAAGAAGGAATAGCCTTTCAGACAGATAATGGTTCTGAGCTGCTACCCATAACAACAATAGAGGAAAAGTTGGGTT TGACAGCAAGCTTCATCCGTATGACTTTCAACATTGTGGATGACGGAGCAGTGGATTTGAACAGAGAGCTTATATCTAAACTACTTGAACTTGATGATGT GGACGTAGTTTATGCGGACCAGAAATGA
AA sequence Show only first row Show all	>Lus10011628 pacid=23150927 polypeptide=Lus10011628 locus=Lus10011628.g ID=Lus10011628.BGIv1.0 annot-version=v1.0 MRLVGTVLHRFSVGFSSKLPSTISPIPYPTSPVSTDCDPPLRYSVKKGGPNPVSNRVLAAVLDKDKELDVPKEILERNMKRASEKGQEAYIEKIYEVYGY GGVSMVVEGLTDKVNRSVAAIREVVKDYGGKMADSGSVMFKFRRARVVNVKVTDADKDQLLDIALDAGAEDVIEPSIYEDDSDEDRAQSCYKIVSDMDNY AAILSKLREEGIAFQTDNGSELLPITTIEEKLGLTASFIRMTFNIVDDGAVDLNRELISKLLELDDVDVVYADQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25830			YebC-related (.1)		Lus10011628 [exp]	0	1
AT4G33590			unknown protein		Lus10036463 [exp]	3.6	0.7939
					Lus10015674 [exp]	15.9	0.7757
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10024636 [exp]	16.4	0.7783
AT1G28210		ATJ1	DNAJ heat shock family protein...		Lus10020949 [exp]	19.0	0.7517
AT5G52450			MATE efflux family protein (.1...		Lus10019492 [exp]	24.9	0.7501
AT3G02080			Ribosomal protein S19e family ...		Lus10033532 [exp]	25.5	0.7856
AT4G10090		ELP6	elongator protein 6 (.1)		Lus10040357 [exp]	30.9	0.7759
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	33.6	0.7844
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10027795 [exp]	34.0	0.7856
AT2G34050			unknown protein		Lus10013954 [exp]	35.1	0.7707

Compare expression of checked genes

Lus10011628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.