Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61150 169 / 4e-45 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT5G52170 157 / 2e-41 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G00730 147 / 1e-37 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G25530 129 / 7e-32 HD HDG6, FWA HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1) AT4G04890 129 / 9e-32 HD PDF2 protodermal factor 2 (.1) AT4G21750 127 / 4e-31 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 113 / 2e-26 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT1G79840 110 / 1e-25 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT1G17920 90 / 7e-19 HD HDG12 homeodomain GLABROUS 12 (.1) AT1G73360 90 / 8e-19 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005758 [exp] 279 / 3e-87 AT3G61150 419 / 3e-137 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10027437 [exp] 218 / 6e-63 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 215 / 5e-62 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10036567 [exp] 192 / 2e-53 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10031933 [exp] 139 / 2e-35 AT3G61150 410 / 1e-133 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10038876 [exp] 135 / 2e-35 AT3G61150 296 / 1e-93 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10014997 [exp] 127 / 3e-31 AT4G00730 559 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10018359 [exp] 122 / 5e-30 AT4G04890 805 / 0.0 protodermal factor 2 (.1) Lus10027438 [exp] 116 / 5e-30 AT3G61150 95 / 1e-22 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G154700 [exp] 164 / 2e-43 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 161 / 1e-42 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 155 / 9e-41 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 147 / 7e-38 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.011G025000 [exp] 127 / 4e-31 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G020400 [exp] 125 / 2e-30 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.014G152000 [exp] 115 / 3e-27 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 112 / 3e-26 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G074800 [exp] 108 / 7e-25 AT1G73360 640 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.003G052400 [exp] 102 / 5e-23 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain
Representative CDS sequence Show only first row Show all	>Lus10011633 pacid=23172912 polypeptide=Lus10011633 locus=Lus10011633.g ID=Lus10011633.BGIv1.0 annot-version=v1.0 ATGAAGCAAAAGAATAAGAAGCTGAGAGCTGAGAATGAGATGATGAGGCATGGCTTGAAGGACCCACTCTGCAACAACTATGGTGGCACTATGATTCATG TTATTGTCTTGTCTGAGCCTAATCTTTTGTCTTCCGTCCTCTCTCCACCATTTGCTTCCAATGGTACTTGTGGACCAATCACAAATGTTGATGCACCGCC AATGAGGATTCATTTTTCTCATCCTTGCATTGATGCTGGTATGACGAGACCACCGCCAAGTGAGCATGAATTTTTTAGCCTCGAAAAGTTGGTAATTATG GATTTAGCTATGGCTTCTATGCATGAGTTGTTCGTCATGTTTCAAGTTGATAAATCACTCTGGATGAAATTTTGTGAACTTGGTGGTGGTGGTAAGGAAA TGCTCAATCTCGAGGAATATGCTCGAATCGCTCTGCCTTCTTTTAGCCTGCAACGTAGTGGCTTCGTTACTGAGGCTTCGAGGGAGGTTGTCTTTGTCAT GATCGAAAGTGGTGCTCTTGCTGAACTGTCGATGAATTGGGATCGTTGGGCCAAAATTTTTTGTGGTGTGGTTGCTAAGAGCTCCATCATTGAGGTGATG TGCCATGGAATTGATGGAAGCAAAATTGATCCTTTGCAATTGGTAACTTGGATGGAGCATTTGAAATATGATGAAACCTCAATCCACCGAATGTTGAGGC TGGTCATTAGCTCTCGCATCGGTTTTGGTGTCAAAAGGTGGTTGTCCACCCTACAAATATATTGTGAATTCCTGAATATTCACAAGGCGTCCTCCGACAT GCCTAAAGACCCATTATGTATGTATTTTATGCCACATTTTTTAGTGATATCCATCTCACAACGAATTAAGATAATGTACAATGCATGGTTCTTCTTTGTA GTGATGACAAATAAGATCGTATTGAGGATGGAAAAAAGGATGGTGGCCAACTTCTTCTTTGGAGTAGTCGGTAATGGTGATGAAAAGTGGGAGAAGCTCA CAGTCAACAATGTTAGCAAGGATGTGAAGATTCGGGAAAGGAAGAGCCTCACTCGGATTGGGGAGGGCTCAGGGTTCGTGTTAAGAGCCTCAACGTCTAT ATGGTTTCCTTTCTCGAGGCAGAGGTTGTTCAATTTTTTCAATGAAAACTCCAATCTTGATGATCATATGTCACATGGCCCCAACCATGATTATATGTCC CATGGCCCCAATCAGATGGTCGTAATCCAGGAATCATGGCATGATGTTGCAGGGTCGTTGGTAGTGTACGCACCGTTAAGTGTGGCTTCGATGGAGATGG TGATGAAGGATGGACACAACACCTTTGTTGGTCTCTTTCTATCTAAGTGTGCTATTATCCCGGATGGGATAGACAAAAAAAACTTTCCTTTGGCCACCAC AAAGGCGACGGTCATGGTGGGGTGGTCGAAGTTGGAGGATCCATCCTAA
AA sequence Show only first row Show all	>Lus10011633 pacid=23172912 polypeptide=Lus10011633 locus=Lus10011633.g ID=Lus10011633.BGIv1.0 annot-version=v1.0 MKQKNKKLRAENEMMRHGLKDPLCNNYGGTMIHVIVLSEPNLLSSVLSPPFASNGTCGPITNVDAPPMRIHFSHPCIDAGMTRPPPSEHEFFSLEKLVIM DLAMASMHELFVMFQVDKSLWMKFCELGGGGKEMLNLEEYARIALPSFSLQRSGFVTEASREVVFVMIESGALAELSMNWDRWAKIFCGVVAKSSIIEVM CHGIDGSKIDPLQLVTWMEHLKYDETSIHRMLRLVISSRIGFGVKRWLSTLQIYCEFLNIHKASSDMPKDPLCMYFMPHFLVISISQRIKIMYNAWFFFV VMTNKIVLRMEKRMVANFFFGVVGNGDEKWEKLTVNNVSKDVKIRERKSLTRIGEGSGFVLRASTSIWFPFSRQRLFNFFNENSNLDDHMSHGPNHDYMS HGPNQMVVIQESWHDVAGSLVVYAPLSVASMEMVMKDGHNTFVGLFLSKCAIIPDGIDKKNFPLATTKATVMVGWSKLEDPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10011633 [exp]	0	1
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10003530 [exp]	1.0	0.9784
					Lus10035523 [exp]	1.4	0.9617
AT5G67090			Subtilisin-like serine endopep...		Lus10009365 [exp]	3.5	0.9493
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002933 [exp]	8.2	0.9502
					Lus10015828 [exp]	8.7	0.9525
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	11.4	0.9500
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10000101 [exp]	12.6	0.8580
AT2G03200			Eukaryotic aspartyl protease f...		Lus10022917 [exp]	13.9	0.9452
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	14.7	0.9473
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	17.7	0.9395

Compare expression of checked genes

Lus10011633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.