Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60410 838 / 0 ATSIZ1, SIZ1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) AT5G22260 44 / 0.0007 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036123 [exp] 1600 / 0 AT5G60410 913 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10023344 [exp] 1021 / 0 AT5G60410 928 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10038464 [exp] 981 / 0 AT5G60410 1006 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G210200 [exp] 1008 / 0 AT5G60410 1146 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.009G015000 [exp] 1002 / 0 AT5G60410 1148 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.008G042300 [exp] 588 / 0 AT5G60410 775 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.010G219600 [exp] 570 / 0 AT5G60410 732 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011634 pacid=23172902 polypeptide=Lus10011634 locus=Lus10011634.g ID=Lus10011634.BGIv1.0 annot-version=v1.0 ATGGATTTAGTGAATAGTTGCAAGGACCTTGTTGATCGCATATTATTGGTCCTCTCTGTTGACGAAGCTTCCAAAGGATGGCCAAAGAGGGGTGCTGTGG GGAAGGACGAGGCAGCCAAATTAGTTGATGACATTTACAGGAAAATGCAGGTTTCTGGTGCTGATTTAGCTTCGAAACCGCAATGTGTTCTGGATAGTAG CAACACAAAAATTAAAGGAGAACCAGAGGATTCTGTTCACTGTGATGCAAAAGTTCGGTGTCCATGTGGAAGCACATTGGAAACAGAATCAATGATTAAG TGTGAGGAACCCAGATGTCGGGTATGGCAACATCTTGGGTGTGTTATAGTTGCTGAAAAGCCCATGGAAGGGAGTCCCCAAGTCCCTGAGGTGTTTTACT GTGAGATCTGTCGACTGAGCAGAGCTGATCCTACAAATCCAGTTCAGAGTGTAGACAAGTCATTTCACCTGACAAGGGCCGATAAGGACTTATTGACAAA GCCAGAAATCGATGTGCAGGCATGGTGCATGCTTTTCAATGACAAAGTTCCGTTTAGGATGCAGTGGCCACAGTATTCTGATCTACAAGTCAATGGTGTA CCAGTTCGTGCTATCAGTAGACCTGGTTCACAACTGCTAGGGGTGAACGGTCGTGATGATGGGCCCATTATCACACCATGCACAAAGGACGGGATCAATA AGATATCGTTAACTGGATCTGATGCTCGGGTTTTCTGCTTTGGGGTTAGGATAGTGAAGCGGCGTACACTTCAGCAGATACTTGGTATAATTCCTAAGGA GCCTGATGGTGAGCGTTTTGAGGATGCACTTGCTCGTGTTTGTCGTTGTGTTGGAGGTGGACCTGCAACTGATGGTGCTGATAGTGACAGTGATTTAGAG GTTGTTGCAGATTCTATTTCTGTAAATCTTCGTTGCCCTTGGCAATGCCCAATTTGTCTGAAGAATTACTCGTTGGAAAATGTAATCATTGATCCTTATT TCAACCGAATCACCACTAAGATGCGGCACTGCAGTGAGGATATAGCAGAGATTGAGGTTAAGCCTGATGGTTCATGGCGTGTAAAAACTAAAACTGAAGC TGAGCGCAGAGAGGTTGGAGAACTTGCACAGTGGCACAATCCTAATGGTACACCATGCATGCCAACTGGTGAGATTCGGCCAAAGGTGGAAGCAGGGAAG CAGGTCAAACAGGAAGGTGCTTCTGAAGGTCATGGCTTTCCTTGTCTGAAACTTGGAATTAGGAAGAATTCTAATGGGTTTTGGGAAGTCAACAAACCTG AGGAAGCGAATGCCTCGTCTTCTGGTAACAAAATGTTGGAAAAGTTTGAAACACTTGAGCAGAAAGTTATCCCTATGAATAGCAGTGCTACTGCCAGTGA AGATCCAAGTGTGAATCAGGGTGGTGGTGTGAATTTGGATTTTACTAATAGTGGAATAGAACTTGATTCTTTAGCTCTCAACATAGATCCTACATATGGG TTTAGTAAGCAAAATATTTCTGCTCCGGCGGGGGACGCCGAGATCATAGTGCTCAGTGATACAGATGATGAAGTTGATCATGCTATGCTGGTGTCCTCTG GTACTGGCTTCAACAATAACCAAAATGATGCCGGGGTTGGTTTCTCCGTGGCCCAATCTGGGATGCCAGAACCTTATACTGGAGATGCTAATCTGGGTGC TGCTGGGAACTCCTGCTTGGGTCTTTTCTCCGGAAATGGTGATGAATTTGAATTACCTCTCTGGCCACCACAGGATGGACCAGGATTCCAGTTATTTAGT TCAAATGCTTCAGATCCATTGGTTGATTTGCAGCATGGTCCCATCAACTGTCCAACATCAATGAATGGGTATAATTTGGCCCCTGAGACAGGTGTAGGAC ATGCTAATTTAGTCTTAGATTCTTCTGTGGGTAGATCTGATGCAAATGATGGCTTGGTAGATAATCCTTTGGCATTTGAGGAAGATCCTTCTCTGCAACT CTTTCTTCCGACTAGACCTTCAGATTCATCAATGCATTCCAATCTGCGAGATCAGGTTGATATGTCAAACGGTGTTCGTTCCGAGGATTGGATTTCCCTA AGGCTAGGTGGTGCTGCTAGTGCTGGTAGTCATGGTGAATCAGCTCCTGCAAATGGCTTATATCCAAGAGGGTGGAGAGATGGCACCAATGATTGTGCGG GCGGTCATGGTGAATCGACTCTTGCAAACGGCTTGGATCCAAGAGGGTGGATGGTGCCGAACAGAGATGGCACAAATGATAGTGCTGGCGGTCATGGTGA ATCAAGTCCTGCAAATGGCCAGTGGATGCCCGACAGAGCCGTCAACAAGGATTTTTTGGCCGACCCTGCCTCTTTACTTCTTGGCATGAACAATGGTACA TCTGAGAAGCCAAGTCACAGGAGAACTGAAAGCCCATTCTCATTCCCTCGGCAAAAGCGCTCAGTGAGACCGCGACTCTACCTTTCTATTGATACGGACT CTGATTAG
AA sequence Show only first row Show all	>Lus10011634 pacid=23172902 polypeptide=Lus10011634 locus=Lus10011634.g ID=Lus10011634.BGIv1.0 annot-version=v1.0 MDLVNSCKDLVDRILLVLSVDEASKGWPKRGAVGKDEAAKLVDDIYRKMQVSGADLASKPQCVLDSSNTKIKGEPEDSVHCDAKVRCPCGSTLETESMIK CEEPRCRVWQHLGCVIVAEKPMEGSPQVPEVFYCEICRLSRADPTNPVQSVDKSFHLTRADKDLLTKPEIDVQAWCMLFNDKVPFRMQWPQYSDLQVNGV PVRAISRPGSQLLGVNGRDDGPIITPCTKDGINKISLTGSDARVFCFGVRIVKRRTLQQILGIIPKEPDGERFEDALARVCRCVGGGPATDGADSDSDLE VVADSISVNLRCPWQCPICLKNYSLENVIIDPYFNRITTKMRHCSEDIAEIEVKPDGSWRVKTKTEAERREVGELAQWHNPNGTPCMPTGEIRPKVEAGK QVKQEGASEGHGFPCLKLGIRKNSNGFWEVNKPEEANASSSGNKMLEKFETLEQKVIPMNSSATASEDPSVNQGGGVNLDFTNSGIELDSLALNIDPTYG FSKQNISAPAGDAEIIVLSDTDDEVDHAMLVSSGTGFNNNQNDAGVGFSVAQSGMPEPYTGDANLGAAGNSCLGLFSGNGDEFELPLWPPQDGPGFQLFS SNASDPLVDLQHGPINCPTSMNGYNLAPETGVGHANLVLDSSVGRSDANDGLVDNPLAFEEDPSLQLFLPTRPSDSSMHSNLRDQVDMSNGVRSEDWISL RLGGAASAGSHGESAPANGLYPRGWRDGTNDCAGGHGESTLANGLDPRGWMVPNRDGTNDSAGGHGESSPANGQWMPDRAVNKDFLADPASLLLGMNNGT SEKPSHRRTESPFSFPRQKRSVRPRLYLSIDTDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10011634 [exp]	0	1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	1.0	0.9518
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10005164 [exp]	1.4	0.9379
AT1G07480			Transcription factor IIA, alph...		Lus10001563 [exp]	2.6	0.9184
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018126 [exp]	3.0	0.9137
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Lus10037589 [exp]	4.2	0.9253
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	4.9	0.9042
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10014794 [exp]	7.1	0.9133
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	7.2	0.9034
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	8.0	0.9151
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	8.9	0.9207

Compare expression of checked genes

Lus10011634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.