Plant FIBer expression Database

Lus10011636 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003721
[exp]
201 / 2e-66 ND /
Lus10029474
[exp]
187 / 4e-61 ND /
Lus10011959
[exp]
180 / 8e-55 AT2G19480 319 / 5e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3)
Lus10011650
[exp]
166 / 3e-52 ND /
Lus10010034
[exp]
157 / 5e-49 ND /
Lus10008070
[exp]
144 / 4e-43 ND /
Lus10000785
[exp]
137 / 3e-41 ND /
Lus10019570
[exp]
117 / 8e-32 AT1G05785 187 / 2e-59 Got1/Sft2-like vescicle transport protein family (.1.2)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10011636 pacid=23172899 polypeptide=Lus10011636 locus=Lus10011636.g ID=Lus10011636.BGIv1.0 annot-version=v1.0
ATGAATATGGTTGGTGACCTCGAGCCCTTCTGGGTGCTCCTCCCGCTGTCCCTACAGAGAGAGATCGTGGAATGGGCGCTTCCCAAAAGAAATGCATTCA
TGGTTGAGGCCTTGAGGATGATTACACAGCTTAGAAACGGGCAAGTGGATACCCCAATCCGACATCTTGATTGGCATCCGTGTTACATGGGCATGAACAT
CTTCTTCATCCCGCCGCATTGCTACGACTCCTTCCCTGTTGAAGCCCGACTCCTGTTGGCATTCATGGTTAGGAACGGAACTATAGGGGTAGTATTTCAC
ATGACACGATTGGCGGCTTGTGTCGCCAAATGGGAGGCTAATGAGCACGACCCAATCTCAACCGTCCTACAGTCAGCCGACAACTACTACTGTGATGGCA
GAATCAAGGAAAGCACTGGGATTCTCTCAGAGGTACAGATCGAGAACACCTTCTACCTTGAGGCAGAGTATAACCAAGCAGTCTTTAGGGATGTCAACTT
TAGGAGAAGTTTTGGATCCCATTGTACGATGCCGGTTCGTTTATCAGAAATGGGGAAGGCAGCGGCTAAAAATCGGAAGTAG
AA sequence
>Lus10011636 pacid=23172899 polypeptide=Lus10011636 locus=Lus10011636.g ID=Lus10011636.BGIv1.0 annot-version=v1.0
MNMVGDLEPFWVLLPLSLQREIVEWALPKRNAFMVEALRMITQLRNGQVDTPIRHLDWHPCYMGMNIFFIPPHCYDSFPVEARLLLAFMVRNGTIGVVFH
MTRLAACVAKWEANEHDPISTVLQSADNYYCDGRIKESTGILSEVQIENTFYLEAEYNQAVFRDVNFRRSFGSHCTMPVRLSEMGKAAAKNRK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10011636
[exp]
0 1
AT4G16295 SPH1 S-protein homologue 1 (.1) Lus10000558
[exp]
1.7 1.0000
AT3G51590 LTP12 lipid transfer protein 12 (.1) Lus10004067
[exp]
2.4 1.0000
AT1G17930 Aminotransferase-like, plant m... Lus10005482
[exp]
3.0 1.0000
AT3G16970 Plant self-incompatibility pro... Lus10011753
[exp]
4.0 1.0000
AT4G16295 SPH1 S-protein homologue 1 (.1) Lus10011892
[exp]
4.5 1.0000
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Lus10022473
[exp]
4.9 1.0000
AT4G10950 SGNH hydrolase-type esterase s... Lus10023070
[exp]
5.3 1.0000
AT1G34575 FAD-binding Berberine family p... Lus10023373
[exp]
5.7 1.0000
AT2G02340 ATPP2-B8 phloem protein 2-B8 (.1) Lus10025662
[exp]
6.0 1.0000
AT4G27570 UDP-Glycosyltransferase superf... Lus10013368
[exp]
6.3 1.0000

Lus10011636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.