Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56450 427 / 8e-154 PBG1 20S proteasome beta subunit G1 (.1) AT5G40580 43 / 7e-05 PBB2 20S proteasome beta subunit PBB2 (.1.2.3) AT3G27430 43 / 8e-05 PBB1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT4G14800 41 / 0.0003 PBD2 20S proteasome beta subunit D2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036124 [exp] 504 / 0 AT1G56450 426 / 4e-153 20S proteasome beta subunit G1 (.1) Lus10032102 [exp] 46 / 1e-05 AT3G27430 473 / 6e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10014581 [exp] 45 / 3e-05 AT5G40580 471 / 2e-169 20S proteasome beta subunit PBB2 (.1.2.3) Lus10041194 [exp] 40 / 0.001 AT3G22630 363 / 9e-130 20S proteasome beta subunit D1 (.1) Lus10021909 [exp] 40 / 0.001 AT3G22630 360 / 2e-128 20S proteasome beta subunit D1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G037700 [exp] 430 / 6e-155 AT1G56450 407 / 5e-146 20S proteasome beta subunit G1 (.1) Potri.006G242000 [exp] 424 / 1e-152 AT1G56450 399 / 1e-142 20S proteasome beta subunit G1 (.1) Potri.006G077900 [exp] 51 / 2e-07 AT4G31300 416 / 2e-149 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.010G084800 [exp] 45 / 1e-05 AT3G22630 366 / 6e-131 20S proteasome beta subunit D1 (.1) Potri.004G066000 [exp] 45 / 2e-05 AT3G27430 495 / 1e-179 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.017G071100 [exp] 45 / 2e-05 AT5G40580 497 / 1e-180 20S proteasome beta subunit PBB2 (.1.2.3) Potri.008G155500 [exp] 44 / 3e-05 AT3G22630 364 / 6e-130 20S proteasome beta subunit D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit
Representative CDS sequence Show only first row Show all	>Lus10011640 pacid=23172916 polypeptide=Lus10011640 locus=Lus10011640.g ID=Lus10011640.BGIv1.0 annot-version=v1.0 ATGGAATCGAATCAAACTAAGCCGAGCCTTCTGGCTTCTGAATCTGAGTCCCAGCGAACGCTATATCCGTATGTGACTGGTACTTCTGTGGTGGCTTTGA AGTACAAGGACGGGATTTTGATGGCTGCTGACATGGGAGGTTCATATGGGTCGACCTTGCGATACAAGAGTGTGGGTCGAATGACGCCTGTTGGCAAGCA CTCTTTGCTTGGCGCAAGTGGGGAAATCAGCGATTTCCAGGAGATATGCCGGTATCTTGATCAGCTGGTCCTAAATGACAACATGTGGGATGATGGGAAC TCTTTGGGTCCAAAGGAAGTGCACAACTATTTGACTAGAGTTATGTACAATAGGAGGAACAAGTTTGATCCTTTTTGGAATGCGCTTGTTCTTGGTGGAG TTAAAAATGGTCAGAAGTATCTCGGCATGGTAAACATGATTGGTCTTAATTTTGAGGATGATCATGTTGCGACTGGATTCGGAAATCACCTTGCTCGGCC AATCCTTCGTGACGAGTGGCATGAAAACCTGAGCTTTGAAGATGGTGTTAAGTTGCTGGAGAAATGTATGCGTGTGCTCTTGTACCGTGACAGATCTGCT GTCAATAAGCTTCAGATAGCTAAGATAACGGAAGAAGGTGTGACAATTTCACAGCCCTACTCGTTGAAGACTTTCTGGGGATACGCAGCATTCCAGAATC CAACTGCAGGTGCGGAGGGATCATGGTAG
AA sequence Show only first row Show all	>Lus10011640 pacid=23172916 polypeptide=Lus10011640 locus=Lus10011640.g ID=Lus10011640.BGIv1.0 annot-version=v1.0 MESNQTKPSLLASESESQRTLYPYVTGTSVVALKYKDGILMAADMGGSYGSTLRYKSVGRMTPVGKHSLLGASGEISDFQEICRYLDQLVLNDNMWDDGN SLGPKEVHNYLTRVMYNRRNKFDPFWNALVLGGVKNGQKYLGMVNMIGLNFEDDHVATGFGNHLARPILRDEWHENLSFEDGVKLLEKCMRVLLYRDRSA VNKLQIAKITEEGVTISQPYSLKTFWGYAAFQNPTAGAEGSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56450		PBG1	20S proteasome beta subunit G1...		Lus10011640 [exp]	0	1
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10020599 [exp]	6.2	0.7832
AT3G62810			complex 1 family protein / LVR...		Lus10040570 [exp]	6.3	0.7530
AT1G56450		PBG1	20S proteasome beta subunit G1...		Lus10036124 [exp]	14.9	0.8142
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10036786 [exp]	16.2	0.7717
AT3G58730			vacuolar ATP synthase subunit ...		Lus10027271 [exp]	17.5	0.7092
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10016486 [exp]	22.6	0.7392
AT4G35690			Arabidopsis protein of unknown...		Lus10041834 [exp]	25.1	0.6879
AT1G65290		MTACP2	mitochondrial acyl carrier pro...		Lus10020221 [exp]	25.8	0.7320
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10013859 [exp]	29.8	0.7022
AT2G18110			Translation elongation factor...		Lus10017261 [exp]	34.8	0.6933

Compare expression of checked genes

Lus10011640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.