Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07960 178 / 1e-55 ATPDIL5-1 PDI-like 5-1 (.1.2.3) AT2G47470 65 / 8e-12 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 65 / 3e-11 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 59 / 2e-09 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G21750 49 / 3e-06 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 43 / 0.0002 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT4G27080 41 / 0.0008 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036125 [exp] 220 / 1e-71 AT1G07960 214 / 1e-72 PDI-like 5-1 (.1.2.3) Lus10036337 [exp] 67 / 3e-12 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 67 / 3e-12 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10015160 [exp] 65 / 2e-11 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10020691 [exp] 59 / 2e-09 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10031522 [exp] 59 / 3e-09 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10035360 [exp] 57 / 1e-08 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10029681 [exp] 50 / 1e-06 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 50 / 1e-06 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G004500 [exp] 184 / 7e-58 AT1G07960 182 / 3e-60 PDI-like 5-1 (.1.2.3) Potri.002G198300 [exp] 69 / 9e-13 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 66 / 8e-12 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G160000 [exp] 63 / 8e-11 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.005G179000 [exp] 47 / 2e-05 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G082100 [exp] 44 / 8e-05 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10011641 pacid=23172906 polypeptide=Lus10011641 locus=Lus10011641.g ID=Lus10011641.BGIv1.0 annot-version=v1.0 ATGATTGCCGCGACTGTATCAAAGCGCAAGCAAGTAATGGGAAGCTTGAATCGCGCTGGTTCCCTCTCCTACCTTCTCCTCCTCTTGTTCCTCATTTCGC CTACGCAACCTGAAGTTATAACCCTAACCCCGGAGACATTCTCCGACAAGGTAAAGGAGAAAGACACAGCATGGTTTGTGAAGTTTTGTGTTCCTTGGTG CAAACACTGTAAAAATCTTGGCTCATTATGGGAGGAGCTAGGGAAGGCAATGGAAGGAGAAGATGAGATAGAGGTTGGAGAAGTTGATTGCGGAGCAAGC AAACCTGTGTGCTCAAAAGCCGACATTCACTCATACCCAACATTCAAGGTCTTTTATGATGGAGAAGAAGTTGCTAAATACCAAGGGAATAGGGATGTAG AATCACTGAAAGCATTCGTCTTGGACGAAGCTGAAAGGGCGGCAACCAAAGCTGAAGTGCTGGCTGGCTCTCCATGTTCGCCAAGGAAAGTTGTGTTTAG ATTGCTTGATTTGTGCCCTCCAAGGCTGGAGCTGATTCCACAAATGCTCCAGATACCTATCCGGGTTCACCTCTGCTATCTGTCTTGTGATTTTTCCACG GTGAAAATCGGTTATCATCTGGGGTCGCTTCTTGGCCAGGTCTATGATGCAATGGTGTGTGCAGGAATTCAATCTTGTAAAGTGTTCATCCTCATTTGTG GTGTCATCAACGCTTCTTGCCCTCTTCAACTGGAGATTATGGGAAGATACAAAGGTACAATTGTGCCTGCAATAGCATTGTATGACCACTGCCGTCTGAG TTTCTTTCACTGTGGGATGATTGGGCACGATTTCGACAACTGCTCTCGTAAAGGCATGCTGATTCAGAGCAAGTACAAGTACGGTCCAAAGATTCGTGTC AAAGCGGGATGGTTCAAAGTGGACGAAAAAACGACGAAGAGAGTGATGGGCGGATTTTACCCCGCTTTCAAATACCCACTAGATTGCTCTAGTGGGATCG TAAATCTCCCTAGGGTCTTTCTATTCTTATTACTCAAGTTGATTTTCTAA
AA sequence Show only first row Show all	>Lus10011641 pacid=23172906 polypeptide=Lus10011641 locus=Lus10011641.g ID=Lus10011641.BGIv1.0 annot-version=v1.0 MIAATVSKRKQVMGSLNRAGSLSYLLLLLFLISPTQPEVITLTPETFSDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEELGKAMEGEDEIEVGEVDCGAS KPVCSKADIHSYPTFKVFYDGEEVAKYQGNRDVESLKAFVLDEAERAATKAEVLAGSPCSPRKVVFRLLDLCPPRLELIPQMLQIPIRVHLCYLSCDFST VKIGYHLGSLLGQVYDAMVCAGIQSCKVFILICGVINASCPLQLEIMGRYKGTIVPAIALYDHCRLSFFHCGMIGHDFDNCSRKGMLIQSKYKYGPKIRV KAGWFKVDEKTTKRVMGGFYPAFKYPLDCSSGIVNLPRVFLFLLLKLIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10011641 [exp]	0	1
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10030294 [exp]	1.0	0.8507
AT5G14240			Thioredoxin superfamily protei...		Lus10032064 [exp]	2.4	0.8467
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10017043 [exp]	2.6	0.8124
AT5G54750			Transport protein particle (TR...		Lus10028720 [exp]	3.5	0.8303
AT4G20960			Cytidine/deoxycytidylate deami...		Lus10037850 [exp]	3.7	0.7877
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10013010 [exp]	4.9	0.8136
AT5G11900			Translation initiation factor ...		Lus10024986 [exp]	6.0	0.8300
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10000062 [exp]	11.1	0.7477
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10040307 [exp]	11.2	0.8275
AT3G62790			NADH-ubiquinone oxidoreductase...		Lus10035034 [exp]	11.6	0.8080

Compare expression of checked genes

Lus10011641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.