Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60210 120 / 3e-31 RIP5 ROP interactive partner 5 (.1.2) AT2G37080 98 / 2e-23 RIP3 ROP interactive partner 3 (.1) AT1G17140 59 / 6e-10 RIP1, ICR1 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2) AT1G78430 57 / 2e-09 RIP2 ROP interactive partner 2 (.1) AT3G53350 48 / 3e-06 RIP4 ROP interactive partner 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026482 [exp] 107 / 3e-26 AT2G37080 435 / 7e-147 ROP interactive partner 3 (.1) Lus10019912 [exp] 105 / 4e-26 AT2G37080 264 / 7e-83 ROP interactive partner 3 (.1) Lus10023173 [exp] 84 / 1e-18 AT2G37080 315 / 2e-101 ROP interactive partner 3 (.1) Lus10015064 [exp] 79 / 1e-16 AT2G37080 155 / 4e-42 ROP interactive partner 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085900 [exp] 125 / 8e-33 AT2G37080 474 / 2e-161 ROP interactive partner 3 (.1) Potri.006G131400 [exp] 122 / 7e-32 AT2G37080 473 / 1e-160 ROP interactive partner 3 (.1) Potri.001G377900 [exp] 52 / 1e-07 AT1G78430 238 / 5e-76 ROP interactive partner 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011643 pacid=23172903 polypeptide=Lus10011643 locus=Lus10011643.g ID=Lus10011643.BGIv1.0 annot-version=v1.0 ATGCAGGCACCAAAGGCAAGCAGAAGTGGATCAACGTCAGAAACACCTCAAAAGGTGTCTCTCCGAGCTGCACGTCAAGTAGTTAAGACAAGTGGGTTTG AGGCTGACTCTGCATCTCCATCAAAGAAGAGTAGTAGGAGCCCTAAAGTTTCCGTTCCTGACCGCAAGTCACCACTCAGTCCTGCATCATCTGAGGAGCC GGAAAGTGTGAAAGATACAGTTGGTGAACTAAAGTGTAGCTTGATGGACAAGGAAACTGAGTTACAGAACATAGCAGAGGAGAACAGGACATTGAAGATC GAGATTTGTAAGATGGGAGAATGCACGAATGGCGAGCTAGAAGCAGTGGGAGCGTCGGAGAGGGAAGCAGTAATGAAGCTTGGGATGATGAGCGTGGAGG CAGAGAAGAGCAGGAAGGAGGGGAGAGTGAGGGAGCAGCTGGATGCAGCGGAGGCAGTGAATTCGGAGATGGAGGCAGAGCTGAGGAGGCTAAAGGTGCA GTCAGATCAATGGAGGAAAGCAGCAGAGGCAGCTGCTTCTATGCTTTCAGGAGGGAACAACAACAATGGTGGTGGGAGGTTTGTGGATAGGAAGACAGGA GGAGAGTCACCTTACGGGGAAGAGATGGATAATGAAGAAGATGAAGATGATGATATGATGATGAAGAAGAAGAATGGGAATGTGTTGAAGAAGATTGGAG TGTTGTGGAAGAAACAGCACAAGTGA
AA sequence Show only first row Show all	>Lus10011643 pacid=23172903 polypeptide=Lus10011643 locus=Lus10011643.g ID=Lus10011643.BGIv1.0 annot-version=v1.0 MQAPKASRSGSTSETPQKVSLRAARQVVKTSGFEADSASPSKKSSRSPKVSVPDRKSPLSPASSEEPESVKDTVGELKCSLMDKETELQNIAEENRTLKI EICKMGECTNGELEAVGASEREAVMKLGMMSVEAEKSRKEGRVREQLDAAEAVNSEMEAELRRLKVQSDQWRKAAEAAASMLSGGNNNNGGGRFVDRKTG GESPYGEEMDNEEDEDDDMMMKKKNGNVLKKIGVLWKKQHK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60210		RIP5	ROP interactive partner 5 (.1....		Lus10011643 [exp]	0	1
					Lus10026444 [exp]	1.7	0.7960
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	7.1	0.8155
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	8.2	0.8082
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10016688 [exp]	11.5	0.7756
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	14.8	0.7885
AT3G53850			Uncharacterised protein family...		Lus10010881 [exp]	15.5	0.7589
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10001832 [exp]	15.6	0.7488
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10017507 [exp]	16.0	0.7751
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10025165 [exp]	16.3	0.7881
AT5G06270			unknown protein		Lus10021305 [exp]	18.2	0.7347

Compare expression of checked genes

Lus10011643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.