Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13040 482 / 1e-167 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63130 231 / 9e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63150 227 / 3e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 225 / 1e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 225 / 2e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63070 221 / 3e-65 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63330 219 / 5e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 218 / 2e-64 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 218 / 8e-64 RPF2 rna processing factor 2 (.1) AT1G63400 215 / 3e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036129 [exp] 815 / 0 AT1G13040 573 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10026558 [exp] 218 / 2e-62 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 212 / 2e-61 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 212 / 1e-60 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 212 / 5e-60 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 208 / 1e-59 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 206 / 2e-59 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10039056 [exp] 207 / 4e-59 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042768 [exp] 206 / 6e-59 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185000 [exp] 560 / 0 AT1G13040 627 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G032600 [exp] 233 / 6e-70 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 234 / 1e-69 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034300 [exp] 224 / 5e-68 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050300 [exp] 226 / 3e-67 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 224 / 1e-66 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 224 / 2e-66 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G217600 [exp] 226 / 5e-66 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 223 / 5e-66 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G034200 [exp] 221 / 2e-65 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10011646 pacid=23172917 polypeptide=Lus10011646 locus=Lus10011646.g ID=Lus10011646.BGIv1.0 annot-version=v1.0 ATGGCACCCCTGGGCTACTCCCTCTCTGCCTTTACTTACTCCCGCTTCATCTTCAGATTGTGTCAAGTAATGCACTTTGCTCTTGTTGACGAATTGTTAC GCGACATGGAGAGACTTGATCGTTTACCTGATATTTGGGCGTTGAATATATATTTGAATCTTTTGTTTCGTGAAGGTAGGGTAGAATTAGCATTAGAGGT GTTTGATAAAATGGGTGAGAGAGGGAGATTGCCTGACGTTGTAACATACACAATTTTGATTGACGGGTTGTGTAAATCTAATAAGTTGGATAGAGCAGCT CTTGTTTGGAATGAGATGATAGAAAAGGGGTTTCAACCAGATAATAAGGCATGTGCAGCTCTTGCCATTGGGTTGTGTGGGGAAGGGAAAGTGGACTTGG CCTATGATCTAATAGTAGGTTGGATGAATAGCGGTCGAGTGGAGTTTACTGCCTTGGTATATAATGCTTTGATTAGTGGGTTTTGCAAAGCGGGCAAGAT TAATAAGGCACTGGCTATTAAATCATTTATGATGAACAATGGGTGTGTACCAGATATAGTTACATACAATGTGTTAGTGAACTATTGCTGTGATCGGCTT TTGCTGTCTGAGGCAGAGAAGTTGATGAAGAAGGTAGAGGGCAGTGGGATAGGACCTGATGTACATACTTATAACCAATTTCTGAAAGGACTTTGTAAAA TCAATCGGTTGGACGAAGCTAACGTGTATTTGGTGAATACTATGGAACCAAAAGGCTTGTGTGATGTTACTTCATACAATACTTTAATTGGAGCCTTTTG CAAGTGCAAACAAACTAGTAAGGCTTTTGCACTATTTCAGGAGATGGGGCAGAAGATGATTAGACCAGATGTGGTGACATTCACAATACTTATAAGAACC TTCCTTGGGGAAGGTAGTTCTGACGTAGCCAAGAAACTTCTAGACCAGATGACAGGAATGGGTCTCCTTCCTGATCTTATATTTTATACTACTATTATTC ATCATCTCTGCAGAAGTGGAAAAGTTAAGGCAGCTCATGGTGTTTTCTCAAATATGACGGAGCATCAAATTGTGCCAGATGTAATGTCATATAATGCCCT TATTAGTGGGTATTGTAGATCTTTTAAAACAAATGAAGCCATGGATTTATATGAGGAGATGCTGCGTAAGGGATGCCATCCTGATGAAGTAACATACAAA TTACTTCTCAAAAGCCTTATAAGGGACAGAGAAATTCCAGTTGCTTGTAGATTGTGGGATCATATGATGGAGAAAGGATTTACACTGGATAGAATTGTTT CTGAAACACTCATTGCAGAATTCCAGAAATCAGAATGCTTTTGGTATGATGATTATTATTTCTGTGGTTTCCTTTACATATATACACAGTCTGCATCATT AGGATGCAGATCCAGCTCGTAG
AA sequence Show only first row Show all	>Lus10011646 pacid=23172917 polypeptide=Lus10011646 locus=Lus10011646.g ID=Lus10011646.BGIv1.0 annot-version=v1.0 MAPLGYSLSAFTYSRFIFRLCQVMHFALVDELLRDMERLDRLPDIWALNIYLNLLFREGRVELALEVFDKMGERGRLPDVVTYTILIDGLCKSNKLDRAA LVWNEMIEKGFQPDNKACAALAIGLCGEGKVDLAYDLIVGWMNSGRVEFTALVYNALISGFCKAGKINKALAIKSFMMNNGCVPDIVTYNVLVNYCCDRL LLSEAEKLMKKVEGSGIGPDVHTYNQFLKGLCKINRLDEANVYLVNTMEPKGLCDVTSYNTLIGAFCKCKQTSKAFALFQEMGQKMIRPDVVTFTILIRT FLGEGSSDVAKKLLDQMTGMGLLPDLIFYTTIIHHLCRSGKVKAAHGVFSNMTEHQIVPDVMSYNALISGYCRSFKTNEAMDLYEEMLRKGCHPDEVTYK LLLKSLIRDREIPVACRLWDHMMEKGFTLDRIVSETLIAEFQKSECFWYDDYYFCGFLYIYTQSASLGCRSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10011646 [exp]	0	1
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10022368 [exp]	1.0	0.9092
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10036638 [exp]	3.0	0.8792
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	5.5	0.8917
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003599 [exp]	5.8	0.8958
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10029118 [exp]	6.6	0.8894
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10026968 [exp]	6.9	0.8665
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036543 [exp]	7.5	0.8852
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	7.7	0.8873
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10041275 [exp]	9.8	0.8799
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10038110 [exp]	10.5	0.8750

Compare expression of checked genes

Lus10011646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.