Plant FIBer expression Database

Lus10011648 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G53200 164 / 4e-43 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030239
[exp]
564 / 0 AT1G53200 257 / 4e-77 unknown protein
Lus10005971
[exp]
123 / 2e-31 AT1G53200 66 / 4e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G106300
[exp]
400 / 2e-131 AT1G53200 302 / 1e-93 unknown protein
PFAM info
Representative CDS sequence
>Lus10011648 pacid=23172904 polypeptide=Lus10011648 locus=Lus10011648.g ID=Lus10011648.BGIv1.0 annot-version=v1.0
ATGAAGGGTGTGAAAGGCAGAGGGTTGAAAAACCTGTCCGACTCGGATGGAATTATTCTTATCAAATCAAAGAAACGGAGGATAATAAAGGATTCTAATG
ATGAATTTCAGGTCAAATTGGCACAAAGGCTTTACAAAAGAGTCTTATTATCATTGGGAAACCCTTCTTCTGTACTTGGACTAGCCTCAACAACCTTGCG
ACCAGAAAATCGTATCAAACTCACAACTCTCCTGTCCAAGTTTGTGAGACGGCACGATTGGATTTCAGCAAGTGGTGTATTAAGTGTCTTGTTAAGAGAC
ACACAAAACCAGGATCCACACATCCATCGCTTCAAGTATTGGGTTTTACTCAAGTTACTTCAGCATATAGAAGGCGATTGTCTCAGAGCTAGAACTATTG
GTCGTGTCTTTGATGCTTGGATGTCAAGGATAGGAATCAAGTTGTCGCATACGGGGACAAATAGTTCTATGAATGAGGTTCAGTTTGTTGTTCGACTGGA
AGCTATCCTTTTTAATTTTATGCAAGGTCATGTTGAGCAGGAGTGCCAGAATGCTAGAAGCCTAATCCAGGAACGTCGATTTGAGGGTCATCCAATGTTC
AACATGATCATTGGCCTCATATTTTATCAGTTGTGGTACTCTGGCATTTCACCAGACATGCAATTGAAGCGTTCCAACCAACTGCATCATCACATGATCA
TTGGCCTCATATTTTATCAGTTGTGGTACTCTGGCATTTCACCAGACATGCAATTGAAGGGTTCCAACCAACTGCATCATGATATCCCTTCAGATATGGA
AGCTGACACTGGTTCACATTCAGATATACCGGATTCAGTGAGTAATGATACGAAATCTTGGAGATGTGAACCTGACATGAAAAATAAACAAGTGTTAGAT
GGTAATGGTATGGATTTTCATAAAGAAGATATTCAGTTTAGGCAGCCTAGAGGCTTTTATTTTGACTACGACGAGGCCTCCGATGATCAGGCTGATGATG
ATGATGATGATGATGATGTTTACTCTACAGAAAGTCTTGAGAAAATGGATCTATGGTTGAGGCCAATAGTTGGTGATAAGTGTGGTATGGAGAAAGCAGT
TAACAGTGAAGAATACAAAAATGCGGTAATGTATCTGTCAAGAGCTGCTTCCTCAACACCCCCTGTACTGGCTGCCCTGCTTCCTTTAGTTCAGTTATTG
CTGATAAGGAATGACTGGAAAGAGGCCCTTAGAGAGTTGGACAATTTCTGCAGCAGTTCAAGTGGTGCCTCGCTTCCCCATAGATTGAAATCCTGTCTCC
TGGAGAATATCAATCCAAACAACAGCGACTTACTGTCGAGGTGTTATGAGGGCACATTGAAGAGTGATCCTACATGTACACAGTCTATGGCAAAGCTTGT
GAGACTGCATCAACTAGGAATGTATAGCTCAGAAGCCCTTATAGAAATGATAGCTTTGCATTTAGATGCTGTGATGGGAGAAGAAAACAATGTTAGGAGA
GAGTTGGCTTTATACTTTGTCGGAGTACTGGCTCGACGACAGGAAGAGGATGGAATGGTGTCTTCACCAAAAGGAGAAGAAGAATTAGAATCTCGGCCGG
GTTTCCTTGTAAACAGGGAATCATGGAAACTAAGATGTAAATGGTGGAAGAATCGCCACTTTAGCAAGAACAAGCTTGCATCAGATATCGCGGCAGGTGA
TTTAGAGAGGTTAGCATATAAAGCAGCATGCGCATCTCATTTGTACGGTCCGGAAGTCCGATATGCTGTGGAAGCCAACAGGTATATGCATGGAAAAGGA
GATAGTTGTCGTCGTCGCGATTTAACTTTGTTTTTGGAACAACACATGCGAGGTTCCGTCGCAATTGATCACCATTTTCAATAA
AA sequence
>Lus10011648 pacid=23172904 polypeptide=Lus10011648 locus=Lus10011648.g ID=Lus10011648.BGIv1.0 annot-version=v1.0
MKGVKGRGLKNLSDSDGIILIKSKKRRIIKDSNDEFQVKLAQRLYKRVLLSLGNPSSVLGLASTTLRPENRIKLTTLLSKFVRRHDWISASGVLSVLLRD
TQNQDPHIHRFKYWVLLKLLQHIEGDCLRARTIGRVFDAWMSRIGIKLSHTGTNSSMNEVQFVVRLEAILFNFMQGHVEQECQNARSLIQERRFEGHPMF
NMIIGLIFYQLWYSGISPDMQLKRSNQLHHHMIIGLIFYQLWYSGISPDMQLKGSNQLHHDIPSDMEADTGSHSDIPDSVSNDTKSWRCEPDMKNKQVLD
GNGMDFHKEDIQFRQPRGFYFDYDEASDDQADDDDDDDDVYSTESLEKMDLWLRPIVGDKCGMEKAVNSEEYKNAVMYLSRAASSTPPVLAALLPLVQLL
LIRNDWKEALRELDNFCSSSSGASLPHRLKSCLLENINPNNSDLLSRCYEGTLKSDPTCTQSMAKLVRLHQLGMYSSEALIEMIALHLDAVMGEENNVRR
ELALYFVGVLARRQEEDGMVSSPKGEEELESRPGFLVNRESWKLRCKWWKNRHFSKNKLASDIAAGDLERLAYKAACASHLYGPEVRYAVEANRYMHGKG
DSCRRRDLTLFLEQHMRGSVAIDHHFQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G53200 unknown protein Lus10011648
[exp]
0 1
AT1G04160 XI-B, XI-8, ATX... MYOSIN XI-8, ARABIDOPSIS THALI... Lus10032596
[exp]
1.4 0.8281
AT5G01660 unknown protein Lus10002863
[exp]
1.7 0.8821
Lus10016386
[exp]
3.5 0.7223
AT1G77460 Armadillo/beta-catenin-like re... Lus10029690
[exp]
10.4 0.8062
AT5G59380 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.... Lus10029564
[exp]
13.4 0.7855
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Lus10025414
[exp]
16.1 0.7585
AT3G44910 ATCHX12 cation/H+ exchanger 12, cation... Lus10040962
[exp]
19.4 0.7597
AT5G37820 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINS... Lus10025744
[exp]
23.7 0.7717
AT4G23160 CRK8 cysteine-rich RLK (RECEPTOR-li... Lus10031577
[exp]
26.3 0.7225
AT1G66950 ABCG39, PDR11, ... ATP-binding cassette G39, plei... Lus10006277
[exp]
30.0 0.7171

Lus10011648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.