Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12340 93 / 4e-20 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 81 / 2e-16 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G05420 64 / 3e-12 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48570 43 / 0.0003 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018845 [exp] 506 / 3e-176 AT3G12340 114 / 3e-29 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031121 [exp] 84 / 5e-17 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10031700 [exp] 83 / 6e-17 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10038905 [exp] 77 / 4e-15 AT4G25340 313 / 1e-102 FK506 BINDING PROTEIN 53 (.1.2) Lus10015029 [exp] 76 / 8e-15 AT4G25340 331 / 8e-110 FK506 BINDING PROTEIN 53 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000500 [exp] 112 / 2e-26 AT3G12340 149 / 1e-38 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.015G130900 [exp] 89 / 5e-19 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.012G129200 [exp] 86 / 6e-18 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.002G248300 [exp] 43 / 0.0005 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10011649 pacid=23172913 polypeptide=Lus10011649 locus=Lus10011649.g ID=Lus10011649.BGIv1.0 annot-version=v1.0 ATGGCTTTCTGGGCAGCTGTTATTAAACCAGGACAACCACTCTACCATGCCCCTGGAGGTCCAAAACTCAGACTTACCCAGGCCATCTTGGATAACAGTA GCAATGACAGCTCTGTCAAATGCTCCATACAGTGTACTGTAGATGGTAAGGCACCCGTGAAACTTTGTAATCTGATCCCCAACACTTGTGAGACTTGCCA GATCAACGTTGAGTTTCAAGAACGTCAAGACGTCGTTTTCTCTGTAGTTGGTTCTATGACCGTTCATTTGATTGGCTATCTCAAGTGCTCGGGAGGAGAT AACTTTGACTCTGTAAGTCGCGGTGAGGATATCGCCCAATCCGAGCCAAAGGTGTTCTTTGATCCTAGTAAGGATGAAGAAGCAGAGAATGATAGTTTTA TAAATGATGAGGATCCTGAAAAAGACGTTGACTACGAACCTGATTCATCAGTTTACGAGACAAACAAAAGGAGACGTTCGAAAAGAATAAAAGCTAACCG GAAGGCATATAAGGTGATCAGCGACTCGGATGATTATGATGATCATCAAGATTTTGGTGCTGATGCTACCCCACGGATTGACTTGAAAGTTGAAGATGAG GATGCCAAGTTACATTTGGAGACAGAAGATAAGAAAGATGGCGTTGCTGATAGTAGTACTATGGAAAGGCAATGTGATAACTTGGAAAAGGAAACAGTAC TTGATAATAATGGGAAGCATAAAAAATTGGCTGGAGAAGATGAGGAGGATGATGATGATGGTTTTTTCTTCACTGGATCTTTGCTCACGTTTCCCAAACC TCTTAAAAATAAGACCTGCAGTGAGGTTAAAAATAAGAGAGAGAGCAAAATGCAAACCAAAGGGAATGCAGTTGAGGAACAATTGTCTCTTAAGAACAAG AGCAATAAGCGTGAGAGAAAATCTGAAACGGAAGAAACTATCAATGTTGAGCAGCTCGAAGTAGGAATGAAAAAGGGAAAAGTGGCTTCTTTGGGGAAAA AGGTAAAAGTGTCTTATACTGGAAAATGGAAGGCTAGTGGAAAAGTGTTTGACTCAAATGTTGATGGCGGTCCATTAAGCTTTAAGCTGGGCAATGAAGG GGTGATGGAGGAATGGAATGTTGCTCTGAATGGTAGGCAGTCAGGCGATAGTGTAAGGCTAACAATCCCTCGTCCAGTATGGAAGAGTAGTGGCAGTGGC GAGGTGGCTATGATACCGCCACCTCCACCGAATTTCGAAGATAGTGACAAGGGAGTTGTCTATGATATCAAGGTGCTCAAGGTCCGAAAGAATTGA
AA sequence Show only first row Show all	>Lus10011649 pacid=23172913 polypeptide=Lus10011649 locus=Lus10011649.g ID=Lus10011649.BGIv1.0 annot-version=v1.0 MAFWAAVIKPGQPLYHAPGGPKLRLTQAILDNSSNDSSVKCSIQCTVDGKAPVKLCNLIPNTCETCQINVEFQERQDVVFSVVGSMTVHLIGYLKCSGGD NFDSVSRGEDIAQSEPKVFFDPSKDEEAENDSFINDEDPEKDVDYEPDSSVYETNKRRRSKRIKANRKAYKVISDSDDYDDHQDFGADATPRIDLKVEDE DAKLHLETEDKKDGVADSSTMERQCDNLEKETVLDNNGKHKKLAGEDEEDDDDGFFFTGSLLTFPKPLKNKTCSEVKNKRESKMQTKGNAVEEQLSLKNK SNKRERKSETEETINVEQLEVGMKKGKVASLGKKVKVSYTGKWKASGKVFDSNVDGGPLSFKLGNEGVMEEWNVALNGRQSGDSVRLTIPRPVWKSSGSG EVAMIPPPPPNFEDSDKGVVYDIKVLKVRKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Lus10011649 [exp]	0	1
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10036713 [exp]	4.0	0.7199
					Lus10005902 [exp]	8.0	0.7092
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10032700 [exp]	11.0	0.6554
					Lus10025222 [exp]	12.0	0.6332
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10022992 [exp]	17.4	0.6805
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10038321 [exp]	19.0	0.6738
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	20.7	0.6584
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	21.2	0.6627
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10026511 [exp]	24.2	0.6293
					Lus10021407 [exp]	24.7	0.6611

Compare expression of checked genes

Lus10011649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.