Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23450 326 / 7e-107 Protein kinase superfamily protein (.1.2) AT5G66790 281 / 1e-90 Protein kinase superfamily protein (.1) AT1G25390 214 / 6e-65 Protein kinase superfamily protein (.1) AT1G66880 214 / 8e-63 Protein kinase superfamily protein (.1) AT5G38210 208 / 3e-62 Protein kinase family protein (.1) AT1G18390 204 / 9e-61 Protein kinase superfamily protein (.1.2) AT5G02070 201 / 1e-59 Protein kinase family protein (.1) AT1G69910 197 / 2e-58 Protein kinase superfamily protein (.1) AT3G53840 188 / 6e-55 Protein kinase superfamily protein (.1) AT4G00330 176 / 4e-52 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032741 [exp] 527 / 0 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 303 / 1e-98 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 300 / 1e-96 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 214 / 3e-64 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029132 [exp] 210 / 4e-63 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 209 / 1e-62 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 198 / 1e-58 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10036691 [exp] 186 / 2e-54 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10001423 [exp] 176 / 4e-51 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G130900 [exp] 354 / 9e-118 AT2G23450 773 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G130600 [exp] 350 / 2e-116 AT2G23450 605 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G034500 [exp] 345 / 2e-114 AT2G23450 731 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G038600 [exp] 340 / 9e-113 AT2G23450 620 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G097100 [exp] 229 / 2e-70 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.015G044750 [exp] 228 / 1e-69 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G120800 [exp] 225 / 4e-68 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2) Potri.017G118100 [exp] 224 / 7e-68 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 223 / 7e-68 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.015G045101 [exp] 223 / 1e-67 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011652 pacid=23149654 polypeptide=Lus10011652 locus=Lus10011652.g ID=Lus10011652.BGIv1.0 annot-version=v1.0 ATGCCCAATGGCACCCTCAGCCAGCATTTACACGGCGAGCGAGGCCACGGGCTGACATGGCCCATCCGCCTCGCCATTGTTCTCGAGACGGCTCATGCTG TAGCCCATCTCCACTCGGCAATCCACCCTCCCATTTTCCACAGGGACATTAAGTCTAGCAATATATTGTTGGACTTCAACTACAAGTCTAAACTAGCTGA TTTCGGGCTTTCTCGGTTGGGAATGACCGAAATCTCACACATTTCAACTGCCCCGCAAGGAACACCCGGGTACCTTGATCCGCAGTACCATCAGAATTAT CACCTTTCGGACAAGAGCGATGTATACAGTTTTGGAGTGGTTCTTGTGGAAATCATAACCGGGAGGAAAGCTGTGGACTTCTCGAGGATCCCGAGTGAGG TTAATTTGGCGAATATGGCGGCCGATCGGATTGGGAAGGGGAGACTGGACGAGATTGTGGATCCTAATTTGGAAGTGAATTCGGACGGTTGGACGATTGC GTCGATCCACAAAGTGGCAGAGATCGCCTTTAGGTGTTTGGCATTCGAGAGAGAGTTGAGACCGAGCATGATGGAGGTTGTGGCGGAGCTGGAAGGAATT GAGATGGGGCAATGGGGCGAGACATGTAATTTGGTGACCAGCGGCGAAGGTGGGCGATCATCGTCGGAGGTTTCGCAATGTCGGTCATCTTCTTCGACGA ATATTAGCGAGAGGCCGTTGAGTTTGAATATTGAGAGAGCTGAACTTCAGAATCAAACCAATGGTCTAAAGTCGACGGAGAGATCGGTTAAGACTTATTC ACCGGTCTCAGTACGGGATCCTTGGTTGAGTGAACAGAGCTCACCTGGGTCCAACAGTTTTCAGAACAACGGTGGGGGAACTCGGTGA
AA sequence Show only first row Show all	>Lus10011652 pacid=23149654 polypeptide=Lus10011652 locus=Lus10011652.g ID=Lus10011652.BGIv1.0 annot-version=v1.0 MPNGTLSQHLHGERGHGLTWPIRLAIVLETAHAVAHLHSAIHPPIFHRDIKSSNILLDFNYKSKLADFGLSRLGMTEISHISTAPQGTPGYLDPQYHQNY HLSDKSDVYSFGVVLVEIITGRKAVDFSRIPSEVNLANMAADRIGKGRLDEIVDPNLEVNSDGWTIASIHKVAEIAFRCLAFERELRPSMMEVVAELEGI EMGQWGETCNLVTSGEGGRSSSEVSQCRSSSSTNISERPLSLNIERAELQNQTNGLKSTERSVKTYSPVSVRDPWLSEQSSPGSNSFQNNGGGTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23450			Protein kinase superfamily pro...		Lus10011652 [exp]	0	1
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	1.4	0.9837
AT5G41810			unknown protein		Lus10003901 [exp]	1.7	0.9845
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	2.4	0.9803
AT3G26100			Regulator of chromosome conden...		Lus10036945 [exp]	3.7	0.9739
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	5.7	0.9767
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	5.7	0.9720
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	5.9	0.9754
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	6.0	0.9752
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10008840 [exp]	6.3	0.9724
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	7.7	0.9709

Compare expression of checked genes

Lus10011652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.