Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26490 603 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 494 / 2e-173 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 484 / 1e-169 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 473 / 2e-165 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 469 / 1e-163 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 456 / 2e-160 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 272 / 2e-87 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 251 / 3e-79 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 249 / 6e-79 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 236 / 3e-73 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016289 [exp] 746 / 0 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 701 / 0 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 508 / 1e-179 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 411 / 2e-141 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012036 [exp] 409 / 8e-140 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016779 [exp] 406 / 8e-138 AT3G50390 435 / 2e-148 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 401 / 1e-137 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023836 [exp] 400 / 6e-136 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 262 / 1e-83 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038400 [exp] 640 / 0 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 626 / 0 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 548 / 0 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 534 / 0 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 530 / 0 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 526 / 0 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 273 / 4e-88 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 259 / 1e-82 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 259 / 8e-82 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 251 / 3e-79 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10011655 pacid=23149652 polypeptide=Lus10011655 locus=Lus10011655.g ID=Lus10011655.BGIv1.0 annot-version=v1.0 ATGTCGAGCAACTCCTCCACCGATGACGACTTCTCCGTCTTCAGGAACAGCAGTGCCTCCGCCGCTAGCCCGGGGATGTCTTACGACCCCAACCGCCTCA GCGGCGAAGGATCCCCCATGACCATGTCTCCATGGAACCAAACGACGCCGTTTTCCAAAGCCGCATTCACAACGTACGATGACGCATCATCGCAACAGAA CTGCCTCATCGGGTCCTTGGTCAGGGAAGAAGGCCACATTTACTCCTTAGCCGCTTCCAAGGATCTCCTCTACACCGGATCTGACTCCAAAAACATCCGG GTCTGGAAAAACCTCAAGGAATTCGCAGGCTTCAAATCCAGTAGTGGCTTGGTCAAAGCCATCATACTCTCCGGCGAGAAGATCTTCACCGGCCATCAAG ACGGCAAAATCCGGGTCTGGAAAGCGTCCCCCAAAAACCCGAGCGTCGTCAAAAGATCCGGGACCCTCCCGACTTTGAAAGACATATTCAAAAGCTCCAT CAAGCCAAGCAATTACGTCCAGGTCCGGCACCACAAAACGTCGCTCTGGATCAAGCACAACGACGCCGTCTCGTCCCTCTCCTTCAACGAGGACCGTACC CTGCTTTACTCTGCCTCCTGGGACAGGAGCTTCAAGATCTGGAGGCTCTCCGATTCCAAATGCCTCGAATCTGTCAACGCACACGACGACGCGGTCAATT CCGTTGTCACGACGGTGGAAGGGCTGGTGTTCACCGGATCGGCGGACGGTACCGTGAAGGTCTGGAAGAGGGAACTGCACGGCAAGTCCACGAAGCATGC GCACCAGCAGACGCTGTTGAAGCAGGAATCCGCCGTGACTGCGCTGGCGGTTAACCCGTCGGGATCCCTGGTTTACTGTGGTTCGAGCGACGGGATAGTG AATTTCTGGGAGAGGGAGAAGGATTTGTCGCACGGAGGTGTATTGAAAGGGCACAAGCTGGCGGTTCTCTGCTTGGAAGCGGCGGGGAATTTGGTGTTCA GTGGATCGGCGGACAAGACCATCTGTGTGTGGAGGAGGGACGGGAACATTCACACGTGTCTTTCGGTGCTGACGGGACATGCCGGGCCGGTAAAGTGTTT GGCAGTGGAGGAGGACGGTGAGAACTCAAAGGAAGGGGATCAACGGTGGATTGTTTACAGTGGGAGCTTGGATAAGTCTGTTAAGGTGTGGAGTGTGTCG GAGACGGCAAGTGGAGGGATGTTTTCCGATGGGGAATCTATACCGTCGGAGGGTAGCAACCGAGCCGGCCACAGAGATTGGTAA
AA sequence Show only first row Show all	>Lus10011655 pacid=23149652 polypeptide=Lus10011655 locus=Lus10011655.g ID=Lus10011655.BGIv1.0 annot-version=v1.0 MSSNSSTDDDFSVFRNSSASAASPGMSYDPNRLSGEGSPMTMSPWNQTTPFSKAAFTTYDDASSQQNCLIGSLVREEGHIYSLAASKDLLYTGSDSKNIR VWKNLKEFAGFKSSSGLVKAIILSGEKIFTGHQDGKIRVWKASPKNPSVVKRSGTLPTLKDIFKSSIKPSNYVQVRHHKTSLWIKHNDAVSSLSFNEDRT LLYSASWDRSFKIWRLSDSKCLESVNAHDDAVNSVVTTVEGLVFTGSADGTVKVWKRELHGKSTKHAHQQTLLKQESAVTALAVNPSGSLVYCGSSDGIV NFWEREKDLSHGGVLKGHKLAVLCLEAAGNLVFSGSADKTICVWRRDGNIHTCLSVLTGHAGPVKCLAVEEDGENSKEGDQRWIVYSGSLDKSVKVWSVS ETASGGMFSDGESIPSEGSNRAGHRDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26490			Transducin/WD40 repeat-like su...		Lus10011655 [exp]	0	1
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10010001 [exp]	5.3	0.9618
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10001319 [exp]	9.9	0.9434
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	12.1	0.9491
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	14.0	0.9472
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10020022 [exp]	15.0	0.9448
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	15.3	0.9488
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10019400 [exp]	18.0	0.9438
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10011318 [exp]	19.2	0.9382
AT1G06930			unknown protein		Lus10024185 [exp]	22.2	0.9373
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10010404 [exp]	24.4	0.9272

Compare expression of checked genes

Lus10011655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.