Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56790 116 / 3e-30 Protein kinase superfamily protein (.1) AT3G13690 115 / 7e-30 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G55200 113 / 4e-29 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 93 / 4e-22 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G56120 93 / 6e-22 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 91 / 2e-21 Leucine-rich repeat transmembrane protein kinase (.1) AT1G52290 91 / 3e-21 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G66460 91 / 3e-21 Protein kinase superfamily protein (.1) AT5G40380 90 / 4e-21 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G53420 90 / 7e-21 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001996 [exp] 120 / 2e-31 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006148 [exp] 119 / 3e-31 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 115 / 1e-29 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020385 [exp] 105 / 2e-26 AT5G61540 429 / 1e-147 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10009559 [exp] 103 / 9e-26 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10030950 [exp] 99 / 5e-24 AT3G13690 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040097 [exp] 96 / 4e-23 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027972 [exp] 96 / 8e-23 AT2G48010 601 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10023645 [exp] 94 / 2e-22 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038300 [exp] 192 / 2e-57 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G130300 [exp] 186 / 3e-55 AT1G55200 535 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G034900 [exp] 117 / 2e-30 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G200000 [exp] 116 / 4e-30 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 114 / 2e-29 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.011G073516 [exp] 100 / 2e-24 AT1G29730 644 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072841 [exp] 96 / 1e-23 AT1G07650 489 / 3e-165 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.005G185500 [exp] 97 / 2e-23 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.011G072966 [exp] 96 / 5e-23 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073616 [exp] 95 / 9e-23 AT1G29740 908 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011656 pacid=23149656 polypeptide=Lus10011656 locus=Lus10011656.g ID=Lus10011656.BGIv1.0 annot-version=v1.0 ATGGGTCATTGGACTTCCATCTACACAGTTGCTGATTTTGGCCTTGCTCGAAGGGATTCTGAATGGAGCCTTGAGACTGAAGAACGTGTAATTGGAACTG CAGGCTATCTTGCGTCGGAGTACGTGAATGAGGGAACAATTACAGACAAGGTGGATGTGTATGCATTTGGAGTGGTGTTGTTAGAACTAATGACTGGCCG AAGAATCAGCGAAATGCAGTTGGAGAACGGTCAGCACCTCTTGTTCTCGAACTGGTTCCAGACTCTTAGCACTACAACCTTCCCAAACCATTTACTTGAT CCATGCTTGACAACCGTAACCAGCCAACGAGTTGAAACCACCTATGAACTAAATGCCATGACTCGAGCTGCTACCTTTTGCCTCCATCAAGATCCGGAAC TTCGACCTCCAATGTCCAAGGTGCTAAGAATATTTGAAGGAGGCGATATGACAATACCTCTGAGCTTGGACTTAAACTCAGTTGGTAGCAGAAGCGGCCA TTTGCGTGGCGTTACATCCTCCAATCCACAATTCGGAACGCGAAGGTGCCATTCTCGGAAACTTTCTCACTGA
AA sequence Show only first row Show all	>Lus10011656 pacid=23149656 polypeptide=Lus10011656 locus=Lus10011656.g ID=Lus10011656.BGIv1.0 annot-version=v1.0 MGHWTSIYTVADFGLARRDSEWSLETEERVIGTAGYLASEYVNEGTITDKVDVYAFGVVLLELMTGRRISEMQLENGQHLLFSNWFQTLSTTTFPNHLLD PCLTTVTSQRVETTYELNAMTRAATFCLHQDPELRPPMSKVLRIFEGGDMTIPLSLDLNSVGSRSGHLRGVTSSNPQFGTRRCHSRKLSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13690			Protein kinase protein with ad...		Lus10011656 [exp]	0	1
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10013734 [exp]	1.4	0.8611
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10007648 [exp]	3.5	0.8402
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10001196 [exp]	16.1	0.7543
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10013615 [exp]	20.8	0.8099
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10000362 [exp]	21.9	0.7952
AT5G06440			unknown protein		Lus10013601 [exp]	24.2	0.7181
					Lus10023773 [exp]	24.7	0.8262
					Lus10021618 [exp]	28.3	0.7865
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	30.6	0.8143
AT1G17930			Aminotransferase-like, plant m...		Lus10027047 [exp]	31.4	0.8067

Compare expression of checked genes

Lus10011656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.