Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 459 / 1e-152 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 441 / 2e-145 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 412 / 2e-134 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT3G25180 380 / 5e-122 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT2G25160 376 / 1e-120 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT4G37320 297 / 6e-91 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT5G07990 296 / 1e-90 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37330 283 / 7e-86 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37370 283 / 1e-85 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37340 281 / 9e-85 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032743 [exp] 937 / 0 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 758 / 0 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10010758 [exp] 587 / 0 AT4G31970 346 / 1e-114 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10028217 [exp] 467 / 2e-158 AT4G31970 292 / 2e-95 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10007837 [exp] 462 / 1e-153 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032745 [exp] 462 / 1e-153 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 434 / 1e-142 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10022762 [exp] 429 / 1e-140 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 421 / 2e-137 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038100 [exp] 617 / 0 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 615 / 0 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 612 / 0 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 584 / 0 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037600 [exp] 577 / 0 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 573 / 0 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 573 / 0 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037500 [exp] 510 / 2e-172 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 481 / 1e-161 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 469 / 3e-156 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10011657 pacid=23149649 polypeptide=Lus10011657 locus=Lus10011657.g ID=Lus10011657.BGIv1.0 annot-version=v1.0 ATGGATCTCATCATTTCCATCCTCTCCAACATTTCATTGGCCGCAACTACCCTAATAGTAGTCTCCCTTATCTTCCTCTATTTCCTCTTCCCACTAGCAA CCACAGCCGTCGGCAAAAAGAACGAAAACGTACCGCCGCAGGCTGGCGGAGCATGGCCGATGGTCGGGCACCTTCATCTCCTAGGTGGGCCGCGGCCGCC ACACAAAGTATTGGGTGACATGGCCGACAAATATGGCTCAATGTTCACAATCCAAATGGGAATCCACCAGACCTTGGTCGTCAGCAATTGGGAGACAGCT AAAGAGTGCTTAACCACCCACGACCGAGTCTTTGCCGACCGACCCGCAACCCTAGCCATGGATCTTCTCGGTTATCAAAGATCCATGATGGGGTTTAGTT CCTATGGGTCCTACTGGCGACAAGTTCGGAAAATTACAACGCTAGAGCTTCTCTCCTCTCACCGCCTGGAGTTGCTGAAAAACGTGAGGGAGTCGGAGGT CAAACTCGCGACAAAGGAACTCTACGGATACTGGGCAAAGAAGGTTGAAAATGGTGCCGTTTCAATGGATATTACTAGCTGGTTTGGTGAGATAACGTTG AACGTTATTCTGAAGATGATCGTGGGGAAATCCATAGGGTACTTCAAGGGAGGAGAAGACGGTGTTAGATTAGTTGGGTTGTTCAAGGATTTTTTTGAAC TTTCTGGGAGGTTTTTGGTGGCTGATGGTCTGCCATATTTGAGGTGGTTGGATGTCGGAGGATTTGAGAAGGCCATGAGGAAAACAGCAGAGGAAATGGA TGTTGTAGTAGGTGGGTGGCTGAATGAGCACAAAGCTAAAAAGAATTCTGCAGGCAGAGTTATGGTGGAGGAGGATTTCATGGATGTGATTCTTAATGTT CTTGATGATGAAGGAAGTATTGAAGGTCGAGATTCCGATACTACTAACAAAGCTACTTGCCTGGCCCTTACATTAGCTGCATCAGACACAACAAGTGTAA CAATGACATGGCTCCTTTCATTACTCGTCAACCATCCCCGGGTCTTGAGGAAAGTGCAAATGGAACTAGACGATAATGTTGGCAAAGAGAGACAAGTCCA AGAGTCCGACCTTCAAAATTTAGTTTATTTGAAAGCAATCGTCAACGAAACCCTTCGTTTATATCCTCCGGCGCCACTTTCTATACCCCACCAATCTATG GAGGATTGCACCGTCGCAGGCTATCTAGTTCCTGAAGGCACCCGTCTCATTGTTAATATATCAAAGATTCAACGTGACCCACAAATTTGGCCAAACCCAA ATGAGTTTCAACCTGATCGATTTCTTACTACTTATAAGGAAGTTGACGTCAAAGGTCATAATTTCGAACTCATACCATTTGGAAGTGGACGGAGGATGTG CCCTGGCTTGAACTTTGCGCTTCAAGTTATATACTTGACCGTGGCCACGCTTTTACATGGTTTTGATTTCTCGAGGGTATCTACTGAATTAGTTAATATG ACAGAAAGTATTGGGCTAACCAATCCAAGAGCTTATCCACTTGAAGTCATGTTGTCTCCTCGCCTGCCTCCTCATTTGAGGCGCAAAAAGATCCCCGCAA GGCAATGTATTAAAAAAGATTACCAGGCCAAACGGACAGCTACAGAGCCAACCTTTTCCCGGTCGAATTTTAGGCCTCAATTTCCGATACAACCGCCGAC AATCAAGCTCTCAACCTCCGCCGTAATGCTTCCAGCGGAAATTGAAGATAGCTTCCAGCCCGCTGCCGATCGGGACAAAGTGGTGGTCGCCGTTAAAGCC GAGAAAGTGATCTCCAAAACTGCACTAGCTTGGGCTCTCTCTCACGTTGTCCATCCCGGTGATTGCATAACCTTACTTGCCGTCTTCCCTGAAGAGAAGA AAACAGGTAAGAAGTTCTGGAGCTTCCCGAGGTTGACCGGTGATTGCGGAAGCACTGCTCACCATCAGAAGCTAACTGATCGATTCTGTGAAATCTCAGA GTCCTGTTCTGAGATGGTTCTTCAATTCCATAACCAAATCGAGGTGGTCTCAGCAACATCGGGAAGTGCTGTGGTCGCAGAAGCAAAGCGAAACGAGGCC AATTGGGTGGTTGTGGACAAAAAACTAAAGCATGAGCTGAAGCATTGCATAGAGGAGCTGCGGTGCAACATCGTACAGATGAAAGGGTCACAGGCCAAAG TCCTCCGGCTTAATTTGGGTTGCTCTAGTGAACCCCAAACCCCGTACTATTCTGCTACCTCATCACCGGATATGGATCCTCTAAAGTATGAAACCCATAG AATGAAGCATTCAACGCCGGTGAGCAGTCCTGAAGAAGAGTCGAGTTGTTCTTATTTGACTGGAAGTTCGTTTTCGACCTACAGCTCCATTACACCTCCT TTTCTTGTTTATGAAGATAATCCTCTATTTGATGGAGGGAAATACAAACCCGTGGACAATGGAAGAAACTTTGATGATTCGCTTGCTGCTATTGAATCTG ACAAAGAAAGACTGGTATCTTTGAAGAATATATATTGGATATCTGAAAACCATGCTGTCAATGGGGACGGACACTCAGTAAGAACTGTACAAGAGTTCAA TCTAGGAAATCAACAACTTTGCTTGCAAAGTTTAGGCAATATGATCAGGATAGCAATTCCACCGACACTCTTGCTGTTAAACAAGAGTACACCAAGCAGG CGAGTGTAA
AA sequence Show only first row Show all	>Lus10011657 pacid=23149649 polypeptide=Lus10011657 locus=Lus10011657.g ID=Lus10011657.BGIv1.0 annot-version=v1.0 MDLIISILSNISLAATTLIVVSLIFLYFLFPLATTAVGKKNENVPPQAGGAWPMVGHLHLLGGPRPPHKVLGDMADKYGSMFTIQMGIHQTLVVSNWETA KECLTTHDRVFADRPATLAMDLLGYQRSMMGFSSYGSYWRQVRKITTLELLSSHRLELLKNVRESEVKLATKELYGYWAKKVENGAVSMDITSWFGEITL NVILKMIVGKSIGYFKGGEDGVRLVGLFKDFFELSGRFLVADGLPYLRWLDVGGFEKAMRKTAEEMDVVVGGWLNEHKAKKNSAGRVMVEEDFMDVILNV LDDEGSIEGRDSDTTNKATCLALTLAASDTTSVTMTWLLSLLVNHPRVLRKVQMELDDNVGKERQVQESDLQNLVYLKAIVNETLRLYPPAPLSIPHQSM EDCTVAGYLVPEGTRLIVNISKIQRDPQIWPNPNEFQPDRFLTTYKEVDVKGHNFELIPFGSGRRMCPGLNFALQVIYLTVATLLHGFDFSRVSTELVNM TESIGLTNPRAYPLEVMLSPRLPPHLRRKKIPARQCIKKDYQAKRTATEPTFSRSNFRPQFPIQPPTIKLSTSAVMLPAEIEDSFQPAADRDKVVVAVKA EKVISKTALAWALSHVVHPGDCITLLAVFPEEKKTGKKFWSFPRLTGDCGSTAHHQKLTDRFCEISESCSEMVLQFHNQIEVVSATSGSAVVAEAKRNEA NWVVVDKKLKHELKHCIEELRCNIVQMKGSQAKVLRLNLGCSSEPQTPYYSATSSPDMDPLKYETHRMKHSTPVSSPEEESSCSYLTGSSFSTYSSITPP FLVYEDNPLFDGGKYKPVDNGRNFDDSLAAIESDKERLVSLKNIYWISENHAVNGDGHSVRTVQEFNLGNQQLCLQSLGNMIRIAIPPTLLLLNKSTPSR RV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011657 [exp]	0	1
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10031438 [exp]	1.7	0.9345
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027429 [exp]	1.7	0.9208
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10011336 [exp]	3.2	0.9126
AT4G26060			Ribosomal protein L18ae family...		Lus10011943 [exp]	7.1	0.9272
AT3G13620			Amino acid permease family pro...		Lus10039180 [exp]	12.9	0.8669
AT5G44250			Protein of unknown function DU...		Lus10021741 [exp]	21.4	0.9142
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10007394 [exp]	32.7	0.8884
AT5G55560			Protein kinase superfamily pro...		Lus10001165 [exp]	32.9	0.8883
AT2G36320			A20/AN1-like zinc finger famil...		Lus10003246 [exp]	38.4	0.8985
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	40.0	0.9002

Compare expression of checked genes

Lus10011657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.