Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 489 / 2e-169 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 473 / 4e-163 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 444 / 5e-152 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 394 / 5e-132 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT3G25180 365 / 6e-121 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT5G07990 317 / 2e-102 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37370 283 / 2e-89 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37400 279 / 8e-88 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT4G37430 277 / 4e-87 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT4G37330 275 / 1e-86 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032745 [exp] 472 / 9e-163 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10007837 [exp] 457 / 5e-157 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011657 [exp] 444 / 5e-147 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 426 / 2e-144 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 421 / 3e-142 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 409 / 5e-138 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 406 / 4e-137 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10022762 [exp] 403 / 9e-136 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038203 [exp] 378 / 9e-126 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G037900 [exp] 598 / 0 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037500 [exp] 516 / 3e-180 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038100 [exp] 484 / 4e-167 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 474 / 2e-163 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 474 / 2e-163 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037300 [exp] 461 / 6e-159 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 457 / 7e-157 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 453 / 4e-155 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037600 [exp] 449 / 6e-154 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 446 / 3e-153 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10011658 pacid=23149646 polypeptide=Lus10011658 locus=Lus10011658.g ID=Lus10011658.BGIv1.0 annot-version=v1.0 ATGGATCTCTTTGCTCCACAGCTAAACACTACTGCAACTATACCACTTGTAGGTGTTGTTCTTTTTCTTTCTTACTTTCTCTTTGGGAGATCCAAACCTG GCAAAGGCAAAAAAGTACCAGAAGCAGGACGATCATGGCCAGTTATAGGTCACCTCTTTTCCTTGTTAGGCACTGAGCTTCCCCACATAAAACTCGCGGC CATGGCTGATAGATATGGTCCTATATTCATGATCAGGATGGGTGCATCCCCGACTTTGGTGGTGAGTACCTCAGAGCTTGCTAGAGAACTCTATACTATC CACGACGTAGCCATATCTTCTCGTCCCGACTACACGGCCTCCCGAATTTTGGGCAATAACAGCGCCGACTTTGGGTTCTCACCTTATGGCGAATATTGGC GCCAAATGAGGAAGATAACAGCCATGGAGCTGCTCTCCAACCGCAGGCTCGGCATGCTGAAACAAGTTAGGACTTCAGAAGTTGAAGGTGGGGTACGGGA TCTCTACAAACTGTGGGAGGTGGAGAAGAAGGTTACTGTTGAGATGAAGAAGTGGTTTGGGGACATCAACTTGAATGTTATTCTCAGGATGGTTGCTGGG AAGAGGTACTTTGGCGGAGCTGCTGATGGAGGTTATAATCGAGAGGCAGAGAGATGCAAGAAGCTGATGAGAGACTTCTTTCACTATGCAGGGCAGCTTG TGGTTCGAGATATTGTCCCATTTCTTGGATTCCTTGATGTTGGCGGATATGAGAAGACTATGAAGAAACTGAATCAAGATTTGAACCACTTAGCTGAGGA ATGGATTGAGGATCATCGTAAAGGAACGCATTCTCACGACCACCAGGACTTCATCGATGTTTTGCTCTCTGTTTTGAAAGATGTAGACCTGGCCGGTTAC GATCTGGATACAGTCTGCAAATCCACAATCATGACTCTGATTGTTGGAGGCACTGATACTACAACCGTGACACTAATCTGGGCGTTGTCCCTGATTCTGA ACAATCCAAGTACCTTAAAAAGGGCGCAAGAAGAACTGGATGCAATTGTTGGCAAGGATAGATTGGTTGACGAGTCAGACATTGACAAGCTTATGTATCT CCAAGCTATTGTGAAGGAGGTAACGAGGTTGTACCCAGCAGGTCCAATTGGAGGCCCACGAGAATTCTACAAGGACTGCAACGTAGGTGGGTACCATGTA CCTGCTGGGACTCGGCTAATAGTCAACCTTTACAAGCTACAGACGGATCCAAATGTTTGGTCAGAGCCAATGGAGTTTAAGCCAGAGAGGTTTCTTACAA CACAGTACAAGGATGTTGATATAAGAGGGCAACACTTTGAGATCATCCCATTTGGTGCAGGAAGAAGGTCGTGCCCTGGAATCAACTTCGGGATTCAAAT GACTCAACTGCTTCTCGCCAGTTTCTTGCAAGCGTTTGACATCTCTACCCCATCAGGTGGGCCGGTTGATATGAGTGCCGTTTCTGGGCTCACTGTCAGT AAGGCTACCCCACTTGAAGTGTTGGTCAACCCACGCTTGCCTCCAAGCCTTTACCAATAA
AA sequence Show only first row Show all	>Lus10011658 pacid=23149646 polypeptide=Lus10011658 locus=Lus10011658.g ID=Lus10011658.BGIv1.0 annot-version=v1.0 MDLFAPQLNTTATIPLVGVVLFLSYFLFGRSKPGKGKKVPEAGRSWPVIGHLFSLLGTELPHIKLAAMADRYGPIFMIRMGASPTLVVSTSELARELYTI HDVAISSRPDYTASRILGNNSADFGFSPYGEYWRQMRKITAMELLSNRRLGMLKQVRTSEVEGGVRDLYKLWEVEKKVTVEMKKWFGDINLNVILRMVAG KRYFGGAADGGYNREAERCKKLMRDFFHYAGQLVVRDIVPFLGFLDVGGYEKTMKKLNQDLNHLAEEWIEDHRKGTHSHDHQDFIDVLLSVLKDVDLAGY DLDTVCKSTIMTLIVGGTDTTTVTLIWALSLILNNPSTLKRAQEELDAIVGKDRLVDESDIDKLMYLQAIVKEVTRLYPAGPIGGPREFYKDCNVGGYHV PAGTRLIVNLYKLQTDPNVWSEPMEFKPERFLTTQYKDVDIRGQHFEIIPFGAGRRSCPGINFGIQMTQLLLASFLQAFDISTPSGGPVDMSAVSGLTVS KATPLEVLVNPRLPPSLYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011658 [exp]	0	1
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035301 [exp]	1.4	0.9589
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	3.9	0.9650
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10007631 [exp]	4.9	0.9446
AT5G61820			unknown protein		Lus10017316 [exp]	6.7	0.9541
AT2G23755			unknown protein		Lus10019660 [exp]	8.7	0.9502
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017208 [exp]	9.9	0.9267
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10009718 [exp]	12.7	0.9318
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	13.0	0.9494
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10040328 [exp]	13.0	0.9329
AT3G47570			Leucine-rich repeat protein ki...		Lus10033329 [exp]	13.5	0.9413

Compare expression of checked genes

Lus10011658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.