Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012429 [exp] 504 / 0 ND / Lus10012497 [exp] 499 / 1e-177 ND / Lus10007158 [exp] 494 / 1e-175 ND / Lus10025017 [exp] 380 / 4e-131 ND / Lus10022149 [exp] 156 / 4e-47 ND / Lus10022526 [exp] 147 / 2e-42 ND / Lus10003177 [exp] 146 / 4e-41 ND / Lus10024215 [exp] 119 / 4e-31 ND / Lus10039674 [exp] 118 / 8e-31 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011659 pacid=23149660 polypeptide=Lus10011659 locus=Lus10011659.g ID=Lus10011659.BGIv1.0 annot-version=v1.0 ATGAATCCCCTCCTCCTCAAAACTTTTTCTAGCCTTGTGCATCAAGATGATAGCTTTCGACAACGATATCAGGAGGTGTTTCGTACATGTCCCATCCTTG CTTCACCTGCAATCAACCACCTTCCATTCGAGAGGTATGATCTCTTCATCGCCGGTATTCTGCGGAACCTGGGATGGGAATCTGCACTCCTTCAGGCACA ACAATCCTTCGCTCCACTGGCTGTCCGACTGTTTTATTCCAATCTTCGGGAAAGCAGAGTTCACCCTGGAACAATCACATCGATAGTTCTGGGCGAGCAC GTTCGGTTCTCCCCTCAGACTCTGGCCACAACTCTGAACCTCTCAACTCAGGGGTTTGTCATTCGAACCTATGATGACATTTGGCGTCATGGTTTTGAAA TGACCAAGGCACTGAGGGAGCTTCTGGATTCCAGCTGGATGGACCTGCAACTACCAGCAACCCTACGGATCACTATACTTCCACCTCACCTACGGCTTAT GCACTACTTTCTCACAAGCACTCTCCTTCCCAGGTCATATTCCAGAGACATTCTCTTACCACTTGATATATTCGTTCTCTGGTGCGCAATTAATGGAAAA CCAGTGAGTCTGCCGCATCTTCTGCTCATGTTCATGCTGGAGGCAAGACTTGAGCAGTTTCCGGGCGACTTACCTTTTGCGCTACAAATCACTACAATGC TGCTCAGGGTGGGGGTTGACCTCTACGGCCTCTGCGTCACGAAGCCCCACCTCAGTGCTGTAGGGGATATCCTCGCTCTCCTCGATATCTCCCCCTCTCC TCCCCAATCATTCACACAGGGGGAGAAACAGCAGCACAGGGTGCTCGAGGAAACAATGATTCCTCAGATAAAGACTCCTCACTGTGGTCCTTAA
AA sequence Show only first row Show all	>Lus10011659 pacid=23149660 polypeptide=Lus10011659 locus=Lus10011659.g ID=Lus10011659.BGIv1.0 annot-version=v1.0 MNPLLLKTFSSLVHQDDSFRQRYQEVFRTCPILASPAINHLPFERYDLFIAGILRNLGWESALLQAQQSFAPLAVRLFYSNLRESRVHPGTITSIVLGEH VRFSPQTLATTLNLSTQGFVIRTYDDIWRHGFEMTKALRELLDSSWMDLQLPATLRITILPPHLRLMHYFLTSTLLPRSYSRDILLPLDIFVLWCAINGK PVSLPHLLLMFMLEARLEQFPGDLPFALQITTMLLRVGVDLYGLCVTKPHLSAVGDILALLDISPSPPQSFTQGEKQQHRVLEETMIPQIKTPHCGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011659 [exp]	0	1
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10027887 [exp]	4.8	0.7623
					Lus10004996 [exp]	10.8	0.7382
					Lus10003285 [exp]	13.2	0.7382
					Lus10000363 [exp]	15.2	0.7382
					Lus10025781 [exp]	17.0	0.7382
					Lus10012497 [exp]	18.3	0.7202
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10041558 [exp]	18.7	0.7382
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	20.1	0.7382
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	21.5	0.7382
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003300 [exp]	22.8	0.7382

Compare expression of checked genes

Lus10011659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.