Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25900 625 / 0 ATKO1, CYP701A3, GA3 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) AT2G40890 191 / 4e-54 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT2G45560 190 / 8e-54 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT4G37430 185 / 5e-52 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT3G10560 183 / 2e-51 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT5G07990 181 / 2e-50 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G57220 179 / 7e-50 CYP81F2 "cytochrome P450, family 81, subfamily F, polypeptide 2", cytochrome P450, family 81, subfamily F, polypeptide 2 (.1) AT4G37400 177 / 3e-49 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT4G37410 175 / 2e-48 CYP81F4 "cytochrome P450, family 81, subfamily F, polypeptide 4", cytochrome P450, family 81, subfamily F, polypeptide 4 (.1) AT3G20950 172 / 3e-47 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032750 [exp] 1006 / 0 AT5G25900 619 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10042640 [exp] 815 / 0 AT5G25900 582 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10042641 [exp] 802 / 0 AT5G25900 595 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10032747 [exp] 792 / 0 AT5G25900 592 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10022898 [exp] 777 / 0 AT5G25900 567 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10020847 [exp] 198 / 1e-56 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033524 [exp] 197 / 2e-56 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10007658 [exp] 187 / 6e-53 AT1G11600 663 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10042815 [exp] 182 / 6e-51 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129700 [exp] 726 / 0 AT5G25900 665 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Potri.006G033300 [exp] 206 / 1e-59 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 201 / 1e-57 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.008G025500 [exp] 196 / 6e-56 AT5G04660 761 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Potri.009G069100 [exp] 192 / 2e-54 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.016G031000 [exp] 186 / 2e-52 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.001G274600 [exp] 182 / 6e-51 AT5G07990 488 / 2e-169 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.002G150100 [exp] 180 / 3e-50 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G007000 [exp] 179 / 1e-49 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G021700 [exp] 177 / 4e-49 AT5G10600 436 / 7e-149 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10011667 pacid=23149657 polypeptide=Lus10011667 locus=Lus10011667.g ID=Lus10011667.BGIv1.0 annot-version=v1.0 ATGGCCACCACCGTTGATATGTCTCTTAATGATATTATTAAGAGCAGTAGAGGGAAAGGCAGAGGTCGATGTACTGCTCGACGTGGAAGAGGTTCTGGTA GGCCATTCAATGCTGGAAAAATGACAGGGCCAGTTCGCAAAGCCGCTGCTGTGGGTGGAGTCGTCTTCTCTCTGTTTTTCATGAAGAAATTGATCCTCGA TCACAAGAAGCCCAACAACTCCAATCTCCGCCTTGTTCCCGAGGTGCCCGGGATGCCGATGATCGGAAACTTGCTGCAGCTCAAGGAGAAGAAACCCCAC AAGACTTTCGCCAAATGGGCTGAGACTTACGGCCCCATCTACTCCATCAAAACCGGCTCCACCTCCGTCGTCGTTCTCAACACCACCGACGTTACCAAAG AGGCGATGGTGACCAAATTCTCGTCAATAAGTTCAAGAAAGCTACCAAAGGCTTTGACCGTCCTGACTCAGGACAAAACCATGGTTGCTATGAGCGATTA TGATGACTTCCACAAGATGGTCAAACGCCACCTTCTCACTAATGTTTTGAGCCCAACAGCTCAGAAAAGGCATCGCTCCCACAGAGTGATAATGGTGGAC AATCTAGGTAGCCAGTTGCAAGCTCATGCCAAGGCTAATCCTGGACAGGCTTTCAATTTCAGGAAGATATTCGAGTCTGAACTCTTCGGCTTATCTATGA GACAAGCAATTGGAAAGGAATTGGAGTCTATCTATGTTGAGGAGTTGGAGACTACATTGTCCAAGAACGAAATCTTCAAAACGTTAGTGTTGGACCCAAT GGACGGCGCCACAGAAGTGGACTGGAGGGAGTTCTTCCCGTACCTCAGCTGGATCCCCAATCCTGGCTTTGAACAAAAGATAGAGCGAATGCATTTTCGG AGGGATTCACTAATGAGTGCCTTGATCAGGGAACAAAAACAAAGGATCGCTTCCGGCAAGGCGGTTGATTGTTACGTCGACCACTTGTTGTCCGAGGCCA AGACCCTGACGGATCTCCAAATCAGGATGCTGATATGGGAGATGATTATTGAAACATCGGATACAATATTAGTCACTGCAGAGTGGGCTATGTACGAACT AGCCAAAAATCCTGAACGTCAAGATAGGTTGTTTCAGCAAATTCAAAGTGAATGTGGGTCCGAGGATGTGTCTGAACAACACTTGTCGAAACTTCCGTAC CTAAGTGCTATTTTCCACGAGACGCTTAGAAGGCATAGTCCTGTTCCTGTCATTCCTATGCGCCACGTGGATGAAGACACCGAGTTAGGAGGGTACCATG TCCCTGCCGGAACTGAGATAGCTATAAACCTGTACGGATGCAATATGGATGATAAGCAATGGAAGAACCCTGAAGAATGGTTACCAGAGAGGTTCCTTAG TGGCGGGTCTGATCCAATGGACCTACACAAAACAATGGCGTTTGGAAGCGGGAAGAGAGCCTGTGCCGGAACGTACCAAGCAATGTTGGTTGTTTGCACT TCGATAGGGAGAATGGTGCAGAAATTTGAGTGGAGCCTAAGGGAAGGGGAGAAAGATAATGTGGATACTGTAGCACTTACTGCAAGAAAATTTGAACCGT TGCACGCAATCGTCAAACCAAGATGCTAG
AA sequence Show only first row Show all	>Lus10011667 pacid=23149657 polypeptide=Lus10011667 locus=Lus10011667.g ID=Lus10011667.BGIv1.0 annot-version=v1.0 MATTVDMSLNDIIKSSRGKGRGRCTARRGRGSGRPFNAGKMTGPVRKAAAVGGVVFSLFFMKKLILDHKKPNNSNLRLVPEVPGMPMIGNLLQLKEKKPH KTFAKWAETYGPIYSIKTGSTSVVVLNTTDVTKEAMVTKFSSISSRKLPKALTVLTQDKTMVAMSDYDDFHKMVKRHLLTNVLSPTAQKRHRSHRVIMVD NLGSQLQAHAKANPGQAFNFRKIFESELFGLSMRQAIGKELESIYVEELETTLSKNEIFKTLVLDPMDGATEVDWREFFPYLSWIPNPGFEQKIERMHFR RDSLMSALIREQKQRIASGKAVDCYVDHLLSEAKTLTDLQIRMLIWEMIIETSDTILVTAEWAMYELAKNPERQDRLFQQIQSECGSEDVSEQHLSKLPY LSAIFHETLRRHSPVPVIPMRHVDEDTELGGYHVPAGTEIAINLYGCNMDDKQWKNPEEWLPERFLSGGSDPMDLHKTMAFGSGKRACAGTYQAMLVVCT SIGRMVQKFEWSLREGEKDNVDTVALTARKFEPLHAIVKPRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10011667 [exp]	0	1
AT1G73340			Cytochrome P450 superfamily pr...		Lus10031866 [exp]	3.7	0.7434
AT5G08540			unknown protein		Lus10010158 [exp]	3.9	0.8090
AT1G78520			Carbohydrate-binding X8 domain...		Lus10042492 [exp]	15.9	0.7221
AT1G78520			Carbohydrate-binding X8 domain...		Lus10026175 [exp]	35.9	0.7251
					Lus10025138 [exp]	48.0	0.6928
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	50.0	0.7494
AT2G46090			Diacylglycerol kinase family p...		Lus10007917 [exp]	54.0	0.7104
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10016066 [exp]	100.0	0.6798
AT5G59240			Ribosomal protein S8e family p...		Lus10016587 [exp]	103.9	0.7096
AT1G02260			Divalent ion symporter (.1)		Lus10039251 [exp]	106.0	0.7141

Compare expression of checked genes

Lus10011667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.