Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06870 69 / 3e-13 Plsp2A plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) AT2G30440 56 / 8e-09 Plsp2B, TPP plastidic type I signal peptidase 2B, thylakoid processing peptide (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032753 [exp] 236 / 2e-72 AT1G06870 379 / 3e-125 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036400 [exp] 107 / 8e-27 AT1G06870 377 / 8e-130 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011670 pacid=23149665 polypeptide=Lus10011670 locus=Lus10011670.g ID=Lus10011670.BGIv1.0 annot-version=v1.0 ATGCAAAAGCCAAGTCCGGTTACTAGTGCTACCACTCTTTTCACAGCCGCCGCATATAAAATCCTAGCAGCCCCGAAAAATTTCGCCCATTTCATAATAT CTAACAACGTCGCTTGTGCAAAAAACCATCTTCCTCCGGGGAAGCCGGAGATCGCCCAGATCCCCCCTCTTCCTATTCCCTTAGGCTTGCTCCAAATCAC CCAGTTAGTAGACGAGCGCGCGATTTACAACTTATTCGTTTGCCAATTCATAATCGTATGTATGGCTATCCGTGTAACCTTTTCCTTCTCGGGCTATGTC GCCCAAAATCTTGCTTCCTCCGCCGGTGCTCGCGTTGGAAACTGCCGGGCCTCGCTCACGGAGTGCTGGATTCGCTCTCGGATCTTCGCCACTCCGTCCA ATCAGAGCGTGGATTCGGAACCTAACAAGTCCCGTGGTGGTTTCCAGCCGAGTCACCGGAGGACTCATGCTTCTATGTACAGCACGATTGAGACGGAGGC GCTTGGAGACAGCTCTAGCTCCCCGATCGCCTCTGGATTGATCTCGCTCGTGAAGTCAACGGCTGGAATTTCATTTTCCTCGCCGTCTTCGTCGGCCGTG TTCGGGATTTCTCCAGTGAAAGCCGCCTTGATTCTTCCGTTTTTACAAGTATCGCGTTGGCTTCCATGTAACGAGCCCCCTGTTTCACCCAAGAGCCGTG AGGTGGATAAAGGAGGGACGGTACAGTCCGTGGAGAATACGGCTACAACCCGCGCGACCCGATTCCCACCACTTCTATGTATCCTACTCTGGATGTAG
AA sequence Show only first row Show all	>Lus10011670 pacid=23149665 polypeptide=Lus10011670 locus=Lus10011670.g ID=Lus10011670.BGIv1.0 annot-version=v1.0 MQKPSPVTSATTLFTAAAYKILAAPKNFAHFIISNNVACAKNHLPPGKPEIAQIPPLPIPLGLLQITQLVDERAIYNLFVCQFIIVCMAIRVTFSFSGYV AQNLASSAGARVGNCRASLTECWIRSRIFATPSNQSVDSEPNKSRGGFQPSHRRTHASMYSTIETEALGDSSSSPIASGLISLVKSTAGISFSSPSSSAV FGISPVKAALILPFLQVSRWLPCNEPPVSPKSREVDKGGTVQSVENTATTRATRFPPLLCILLWM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10011670 [exp]	0	1
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10032753 [exp]	8.5	0.7878
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	10.1	0.7494
AT2G46060			transmembrane protein-related ...		Lus10018827 [exp]	11.7	0.7517
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10033927 [exp]	11.7	0.7652
					Lus10027012 [exp]	13.7	0.7215
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	15.9	0.7395
AT1G08800			Protein of unknown function, D...		Lus10006566 [exp]	22.6	0.7048
AT3G22260			Cysteine proteinases superfami...		Lus10027312 [exp]	23.8	0.7438
AT2G30440		Plsp2B, TPP	plastidic type I signal peptid...		Lus10011671 [exp]	24.6	0.7615
AT1G03080			kinase interacting (KIP1-like)...		Lus10014687 [exp]	41.8	0.7464

Compare expression of checked genes

Lus10011670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.