Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47310 294 / 1e-96 unknown protein AT5G64510 96 / 1e-21 TIN1 tunicamycin induced 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032753 [exp] 668 / 0 AT1G06870 379 / 3e-125 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10020502 [exp] 104 / 2e-24 AT5G64510 555 / 0.0 tunicamycin induced 1, unknown protein Lus10012458 [exp] 102 / 1e-23 AT5G64510 543 / 0.0 tunicamycin induced 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036300 [exp] 359 / 4e-122 AT1G47310 325 / 7e-109 unknown protein Potri.009G081500 [exp] 84 / 1e-17 AT5G64510 515 / 0.0 tunicamycin induced 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011672 pacid=23149653 polypeptide=Lus10011672 locus=Lus10011672.g ID=Lus10011672.BGIv1.0 annot-version=v1.0 ATGAACTGCTACTGTTTCTCCCTCTCTTTCCTCTTCCTCTGCTTTCACTCCACTCTCGCCTTTACTCTCCTCACCAGCAATACAACCCACATCCTTCAGG ATGTTGTAAAGGACATAGCCAAGAAGGAGAACTGGGATTGGGGAGGAATTCAGGTTTCTAAATTGGGGACGAGTAAAGTTAGGCTGGGTTCGTCTCGGAG ATACGAGTTCCGAATCCGATTGGGCAAAAGTTACTTACTTTTCAAGTTCCCTGACGATGATGTTGATATCTGGAGCAATAAGTTCGATAACGGAAGTAGA ATTACTGGCGACGGTGATGGTTTCTGGGATTTGGTAAACGAAGTTGGATCCCGACTTCCACTGCTCAGTACTTTGAATCTCCAAGGTCCATTCGAGTTGT GGGTAGCCGGCGGTGGACAGCTTTCCTTGTCATTGCCGCTAAACATTACACACAGTAATCTGAAACATGTAGTTGTTGGAGAAGGTATAACCGTGGAAGT TACAGGAGCTCAAGAGGTCTCTCTTTTTCATGCTTTCGATTTCGGTTTCGTGGGGAATGGAAGTGTCATAAAAAACAAGGATCAGGATGGGTTTCGTGAA TTCTTTTACGCTTTGTGCAAGCCATTAATTCCAATACGTGTTCTTGGGTCTGCATCACTGAATGCCTTCAAGACCAAGAAACCAGGTGACATCATCAAGA CAGTTTTCTTGTCCGACAATATGATCAATTTGCTTCCGGAGAAGTGCTACAGCAGGAATGGTGGTTACAAGGCAAAGGCTCGCCCTATTCAGTCTTTAGA CTTGAGAATATCTATGCTAGAACGTGTTTTCAGCAACTATCTTGGTGAAAGAATCAAGAATGATGGCCTATGGGGATTTATCAGAGCAACTCTTAAAGCA TCACTGATGATCCGCTTTCAGCTAGAGCTAGAAAAGACTTCAGAGAACAACAACAGGACTCGTAACGCAGAGTGGAGGACAAAGCCATCAGTTGAACGTC TCTGGTTTGAGGTAACAGCAAGAGCTGAAGAGAAGAATCTGAAGCCCATCTTGGTGAAGAAGGTCAGGCCTTTCATTTCAGTTGATACAGCTTCCTGGAG TAATTTGATGTCAAATATCTCCTTTACTAAGTTCCCTTCTATACTTGTCCCTCCGGAGGCTTTAACACTAGATGTGAAATGGTAG
AA sequence Show only first row Show all	>Lus10011672 pacid=23149653 polypeptide=Lus10011672 locus=Lus10011672.g ID=Lus10011672.BGIv1.0 annot-version=v1.0 MNCYCFSLSFLFLCFHSTLAFTLLTSNTTHILQDVVKDIAKKENWDWGGIQVSKLGTSKVRLGSSRRYEFRIRLGKSYLLFKFPDDDVDIWSNKFDNGSR ITGDGDGFWDLVNEVGSRLPLLSTLNLQGPFELWVAGGGQLSLSLPLNITHSNLKHVVVGEGITVEVTGAQEVSLFHAFDFGFVGNGSVIKNKDQDGFRE FFYALCKPLIPIRVLGSASLNAFKTKKPGDIIKTVFLSDNMINLLPEKCYSRNGGYKAKARPIQSLDLRISMLERVFSNYLGERIKNDGLWGFIRATLKA SLMIRFQLELEKTSENNNRTRNAEWRTKPSVERLWFEVTARAEEKNLKPILVKKVRPFISVDTASWSNLMSNISFTKFPSILVPPEALTLDVKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47310			unknown protein		Lus10011672 [exp]	0	1
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10025425 [exp]	6.5	0.7974
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10002588 [exp]	6.9	0.7939
AT3G03210			unknown protein		Lus10010965 [exp]	8.0	0.8206
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	13.1	0.7976
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	22.4	0.7733
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	24.0	0.7738
AT5G66450			Phosphatidic acid phosphatase ...		Lus10041774 [exp]	24.7	0.7860
AT4G22790			MATE efflux family protein (.1...		Lus10007006 [exp]	27.4	0.7342
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	28.7	0.7752
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023338 [exp]	30.2	0.7453

Compare expression of checked genes

Lus10011672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.