Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11490 830 / 0 adaptin family protein (.1.2) AT4G23460 231 / 2e-63 Adaptin family protein (.1) AT4G11380 229 / 6e-63 Adaptin family protein (.1.2) AT3G55480 74 / 5e-13 AP-3beta, PAT2 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022125 [exp] 1050 / 0 AT5G11490 1337 / 0.0 adaptin family protein (.1.2) Lus10028775 [exp] 229 / 7e-63 AT4G23460 1556 / 0.0 Adaptin family protein (.1) Lus10017508 [exp] 229 / 7e-63 AT4G23460 1565 / 0.0 Adaptin family protein (.1) Lus10024654 [exp] 229 / 8e-63 AT4G23460 1560 / 0.0 Adaptin family protein (.1) Lus10032286 [exp] 229 / 8e-63 AT4G23460 1567 / 0.0 Adaptin family protein (.1) Lus10040289 [exp] 75 / 3e-13 AT3G55480 1331 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10023408 [exp] 74 / 5e-13 AT3G55480 1320 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G243100 [exp] 874 / 0 AT5G11490 1355 / 0.0 adaptin family protein (.1.2) Potri.003G130400 [exp] 229 / 7e-63 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.001G101400 [exp] 229 / 7e-63 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.010G202800 [exp] 82 / 2e-15 AT3G55480 1246 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0545 [flax] [poplar] APCOP-app_sub PF09066 [flax] [poplar] B2-adapt-app_C Beta2-adaptin appendage, C-terminal sub-domain CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region
Representative CDS sequence Show only first row Show all	>Lus10011675 pacid=23156321 polypeptide=Lus10011675 locus=Lus10011675.g ID=Lus10011675.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCGGCGCAGTCCTCGCGGTATCCATCGCCATCTCAACCGTCCGGGAAAGGTGAAGTGTCGGATTTGAGATTGCAGCTCCGGCAGCTCGCCG GTAGCCGAGCCCTTGGAGTGGATGATTCGAAGCGGGAGCTATTCAAGAAAGTAATTTCGTACATGACGATCGGGATCGATGTCTCGTCCCTCTTCGGGGA GATGGTCATGTGCTCCGTAACGCCAGATATTGTGCTCAAGAAAATGTGCTACCTCTATGTCGGGAATTATGCCAAGGTCAACCCTGATCTTGCTCTTTTG ACTATTAATTTCCTTCAACGAGATTGCAAAGACCAGGACCCGATGATCCGAGGGCTTGCTTTGAGGAGCTTGAGTTCGCTACGAGTTGCGAATCTAGTGG AGTATTTGGTAGGGCCTTTAGGCTCCGGGTTGAAAGATAACAATGCTTATGTCAGGACGGTGGCTGTTATGGGAGCTCTTAAGTTGTATCACATATCAGC TTCAACTTGTGTTGATGCAGATTTTCCAGCAATTTTGAAGCATTTGATGCTCAATGACTCTGATGCTCAGGTTGTTGTCAATTGTATATCTGCATTGCAA GAGATATGGAACTCAGAATCAAGCACCTCTGAGGAAGCAGCGAGGGAGAAAGAAGGTTTAATTAGCAAGCCCTTTGTGTATTACCTTTTGAATAGCATCA TAGCTCTCACTTCGTGTAATTTCTGTTCCTTTGGCATATTGGCGAACAGAAAGTGGTATTCAGTGTCTTGTGGTATCATGACTAGCTTGTTACTTGAAGA TAATTTAGTGGTCACAAGTCCCCAACCTGGGGGAGGATGGAGAGTTGGTGCTGCTGTCATTTCTTCTAAGTTGCTTCACTTGATCAATCTTGGATCATAT GAAGAATTTACTGCCTGTTTCAAAACGTATTTATGTTGGGTTTTCTGTTATGTTGTCTACCACAGGCTCCGAGAGTTCAATGAATGGGGCCAGTGTCTTG TGCTTGAGTTAGTTGCCAAATATGTGCCATCTGAAAGCAATGAGACTTTTGACATCATGAATCTCCTTGAAGATAGACTTCAGCATGCAAATGGTGCTGT TGTATTGTCAACCATCAAAGTATTTCTTCAGCTGACTTTGTCCATGGCTGATGTTCACCAGGAGGTATATGAGCGTATCAAAGCCCCTCTGCTTACCCTT GTGAGTTCCGGAAGTCCAGAGCAATCTTATGCAGTATTAAGCCACCTTCACCTCCTGGTGATGCGTGCTCCGTATATATTTGCTTCAGATTACAAACACT TCTACTGCCAGTATAACGAGCCGTCATATGTAAAAAAATTGAAGCTTGAGATGTTGACAGCTGTTGCAAATGAAAGTAATACTTATGAGATTGTCACTGA ATTATGCGAGTACGCTGCAAATGTTGATGTTGCTATTGCCCGAGAATCAATTCGGGCTGTTGGAAAGATTGCACTGCAGCAGTATGATGTGAATGCTATT GTTGATAGGCTTCTTCAGTTTCTTGAGATGGAAAAGGACTATGTAACTGCTGAAGCTCTGGTTCTTGTCAAAGATTTGCTAAGAAAATACCCTCAATGGA GTCATGATTGCATTGCTGTTGTTGGGAATATAAGTAGCAACAATGTGCAAGAGCCCAAGGCAAAAGCTGCTCTTATATGGATGTTGGGTGAATATGCACA AGACATGGATGATGCTCCTTACATTTTAGAGAGTCTGGCTGAGAATTGGGAAGAGGATTCTCCTGAGGTCCGTTTGCACCTTCTTACAGCAGTCATGAAG TGCTTTTTTAGAAGACCCCCTGAGACTCAGAAAGCTTTAGGAATTGCATTGGCTGCTGGTCTGGCAGATTTTCATCAGGATGTTCATGATAGAGCGTTAT TCTACTATAGGCTACTACAATATGATGTATCCAGTGCCGAGTGTGTTGTGAATCCTCCAAAGCAAGCTGTTTCCGTCTTTGCTGATACTCAAATGACAAA CACCAAGCATTTCTTGCAGCCATCATATATGTTCACAGATAAGGAGCACCGGGGACCGTTTGAGTTTTCAGACGATGTTGGCAATATAACAGCTGGGACA GAGTCAGAACATGAGGTTCCAGTTAGCATTGTTGAGGCAAATGAAACTAGTGATCTACTATTGAGTACCTCAGAGAAGGACGAAAACAAAGCACTGGTTA CTAACGGCTCTGATTATACTGCCCCCTTGTATGATACATCTATAACTGTCCAGTCGGAGCAGGCACTTGCAGGAACAGATCCAGCGCCACAGCCTAGCTT GGCCGTTGATGATCTATTGCTTGGTCTAGATCTAACAGCACCATCGGCACCTGCTACTTTACCTTGTACATTGAAGCTTAATGCAAGAGCTGTCCTAGAT GCAGGAAGCTTCCAGCGAAAATGGCGGGAACTACCTGTAGCTGTATCCCAGGAATGCGAGTTAAGTCCAGAGGGTGCAATGGCATTGACAACAGCTCAAG CACTCCTCCAGCACATGCAAGGGAATAGCATCCAGTGCATCGCTTCGGGGGGTCAGTCACCTAACTTTAAGTTTTTCTTCTTTGCACAGAAAGCAGAGGA ACCATCCATGTTTCTTGTAGAGTGTAAAATCAATACAGCAACAGCCAAAGCACAAGTAAGTATAAAAGCCGAGGATCAGAGCACGTCGCAGGAATTCTCA AATCTGTTTCGATCAGCTTTGTCTAAGTTCGGCGTGTCATGA
AA sequence Show only first row Show all	>Lus10011675 pacid=23156321 polypeptide=Lus10011675 locus=Lus10011675.g ID=Lus10011675.BGIv1.0 annot-version=v1.0 MAPPAQSSRYPSPSQPSGKGEVSDLRLQLRQLAGSRALGVDDSKRELFKKVISYMTIGIDVSSLFGEMVMCSVTPDIVLKKMCYLYVGNYAKVNPDLALL TINFLQRDCKDQDPMIRGLALRSLSSLRVANLVEYLVGPLGSGLKDNNAYVRTVAVMGALKLYHISASTCVDADFPAILKHLMLNDSDAQVVVNCISALQ EIWNSESSTSEEAAREKEGLISKPFVYYLLNSIIALTSCNFCSFGILANRKWYSVSCGIMTSLLLEDNLVVTSPQPGGGWRVGAAVISSKLLHLINLGSY EEFTACFKTYLCWVFCYVVYHRLREFNEWGQCLVLELVAKYVPSESNETFDIMNLLEDRLQHANGAVVLSTIKVFLQLTLSMADVHQEVYERIKAPLLTL VSSGSPEQSYAVLSHLHLLVMRAPYIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDVAIARESIRAVGKIALQQYDVNAI VDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGNISSNNVQEPKAKAALIWMLGEYAQDMDDAPYILESLAENWEEDSPEVRLHLLTAVMK CFFRRPPETQKALGIALAAGLADFHQDVHDRALFYYRLLQYDVSSAECVVNPPKQAVSVFADTQMTNTKHFLQPSYMFTDKEHRGPFEFSDDVGNITAGT ESEHEVPVSIVEANETSDLLLSTSEKDENKALVTNGSDYTAPLYDTSITVQSEQALAGTDPAPQPSLAVDDLLLGLDLTAPSAPATLPCTLKLNARAVLD AGSFQRKWRELPVAVSQECELSPEGAMALTTAQALLQHMQGNSIQCIASGGQSPNFKFFFFAQKAEEPSMFLVECKINTATAKAQVSIKAEDQSTSQEFS NLFRSALSKFGVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	0	1
AT3G43220			Phosphoinositide phosphatase f...		Lus10039913 [exp]	1.7	0.9018
AT3G58640			Mitogen activated protein kina...		Lus10017649 [exp]	2.4	0.9060
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	3.0	0.9078
AT4G39050			Kinesin motor family protein (...		Lus10041958 [exp]	3.7	0.8910
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	4.9	0.8929
AT4G24840			unknown protein		Lus10009908 [exp]	5.3	0.8997
AT3G58640			Mitogen activated protein kina...		Lus10033608 [exp]	6.0	0.8726
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10019627 [exp]	7.2	0.8205
AT3G50590			Transducin/WD40 repeat-like su...		Lus10009343 [exp]	7.7	0.8936
AT2G07360			SH3 domain-containing protein ...		Lus10027588 [exp]	11.0	0.8727

Compare expression of checked genes

Lus10011675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.