Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03560 62 / 4e-10 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63070 61 / 5e-10 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G21222 59 / 2e-09 protein kinase family protein (.1) AT2G17670 59 / 3e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G48810 59 / 4e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14770 59 / 4e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63400 58 / 6e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 57 / 1e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G17140 57 / 1e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62914 57 / 1e-08 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022128 [exp] 545 / 0 AT2G15630 75 / 2e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025533 [exp] 60 / 2e-09 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 59 / 2e-09 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008969 [exp] 59 / 5e-09 AT5G04810 1121 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10041832 [exp] 56 / 4e-08 AT2G17670 548 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10028850 [exp] 55 / 4e-08 AT5G04810 689 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10043434 [exp] 55 / 6e-08 AT5G04810 1108 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027914 [exp] 55 / 6e-08 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 55 / 8e-08 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G243000 [exp] 288 / 2e-94 AT2G30780 84 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G123600 [exp] 64 / 6e-11 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 59 / 3e-09 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G147700 [exp] 57 / 8e-09 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 57 / 1e-08 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G241300 [exp] 57 / 1e-08 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G119600 [exp] 56 / 3e-08 AT2G30780 432 / 1e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G081700 [exp] 56 / 3e-08 AT5G21222 643 / 0.0 protein kinase family protein (.1) Potri.006G018600 [exp] 56 / 4e-08 AT4G16390 818 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G124900 [exp] 55 / 6e-08 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10011676 pacid=23156337 polypeptide=Lus10011676 locus=Lus10011676.g ID=Lus10011676.BGIv1.0 annot-version=v1.0 ATGGCACTTGCAGCAGCAAGCAAGAGATTCTTGACCCCGGCGACCGGAAGATCGAGTCCATCACTGCCTTATTGTTTTAAATCAAGACTACGTAGTATCT GCAACTCAACGTCCGCTTCCGGTGATACTCTGCTCCAAAAACTGCTTCAGCTCTCCACCTCTCAAATCAAACGCTCTCTGGACTCCGAGGGAGCAGCTGC ATTCGTTTGCTGCGATTCTCTTGTCGCTCGTCTCGCCTCATCTTCTCCTCAGAAAGCCAAGCTCAATGGAGATTGGAGAGACTGCTTAAAGACGGGAAAA TATCATAGCCACCACTACTCCAGTCTGATATCTCTTTCTGCTACGATTCGAGATGTCGCGCTGGAAATGTCCACGTTTACTTGTATGGAGGCTTGTGGAA TTCATCCCACAACTTCAGTTTTCAATTCGCTAATCCATACTTGCCTGTCCTTAAACGATGTAATGACTTCATTGAGCTTGTTCGAGGTTATGGAAAGCTC TGAAAGGTTTAGGCCAGATTCTGAAACTTATGACACTTTCATATTGGGGTTTTCCAATTTAAGAGACATCAATAAGATGCGAGCTTGGTATCAGGCGAAA AGGGATGCTGGGTTCTCTGCTAACTTACGGAACTATGAATCTCTAATCTTTTTCTGTGTTAAGGTTAAAGATTTCAGTTCTGTTGACTTATTTTACGAGG AAATGATGGCTCTAGGAGTGGTCCCTAGTTTGAAAGTACTGGATTGTGTGCTAGATGGACTTTGCAAGAGGAGGAATTGTGAGAGGGTTAAGGAGTTTGT CAAGTTTATGTTGGAATGTCGGTTTGTGGTTAATGGTACTTTGGTCGACAAGGTTGTGAAGTTGTATTCTGAACTTGAGAAAACAGATGAAATGGAGGAG CTACTTCAGACTCTAATGGAGTTCAATCAAGATGGCGAAGCTTTGTTACAGGTGCATTGTGGGACTATAAGGCTGTATGCAATCAGTGTTCCGGAAGGCG CGCCTAGGTCTTGTCGTGAACGTTTCTGTCCGCGGCGCCGATGGTCTGAAACTTTGGTTTCGGAGTCGCCACCAATCGCTTAA
AA sequence Show only first row Show all	>Lus10011676 pacid=23156337 polypeptide=Lus10011676 locus=Lus10011676.g ID=Lus10011676.BGIv1.0 annot-version=v1.0 MALAAASKRFLTPATGRSSPSLPYCFKSRLRSICNSTSASGDTLLQKLLQLSTSQIKRSLDSEGAAAFVCCDSLVARLASSSPQKAKLNGDWRDCLKTGK YHSHHYSSLISLSATIRDVALEMSTFTCMEACGIHPTTSVFNSLIHTCLSLNDVMTSLSLFEVMESSERFRPDSETYDTFILGFSNLRDINKMRAWYQAK RDAGFSANLRNYESLIFFCVKVKDFSSVDLFYEEMMALGVVPSLKVLDCVLDGLCKRRNCERVKEFVKFMLECRFVVNGTLVDKVVKLYSELEKTDEMEE LLQTLMEFNQDGEALLQVHCGTIRLYAISVPEGAPRSCRERFCPRRRWSETLVSESPPIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10011676 [exp]	0	1
AT1G12790			unknown protein		Lus10003529 [exp]	6.6	0.6938
AT1G19980			cytomatrix protein-related (.1...		Lus10017215 [exp]	24.6	0.6777
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	28.4	0.6763
					Lus10001297 [exp]	42.0	0.6475
AT1G26750			unknown protein		Lus10031376 [exp]	42.2	0.6533
AT2G46570		LAC6	laccase 6 (.1)		Lus10030235 [exp]	46.8	0.6423
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10030271 [exp]	69.2	0.5543
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	103.0	0.6042
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011576 [exp]	120.4	0.5737
AT3G23130	C2H2ZnF	FLO10, FON1, SU...	SUPERMAN, FLORAL ORGAN NUMBER ...		Lus10022206 [exp]	183.2	0.5639

Compare expression of checked genes

Lus10011676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.