Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24550 317 / 2e-102 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24540 298 / 1e-96 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT4G32710 293 / 3e-96 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT1G52290 286 / 5e-92 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT4G34440 286 / 4e-90 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT2G18470 277 / 2e-87 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT1G23540 278 / 6e-87 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G10620 276 / 3e-86 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G70460 276 / 4e-86 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G38560 275 / 6e-86 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022129 [exp] 538 / 0 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10011098 [exp] 319 / 3e-103 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 318 / 2e-102 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 309 / 2e-99 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10014318 [exp] 278 / 8e-91 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10024020 [exp] 283 / 6e-90 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10042327 [exp] 282 / 8e-89 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10026335 [exp] 273 / 1e-87 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10029151 [exp] 273 / 1e-87 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G242800 [exp] 342 / 4e-111 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.018G081300 [exp] 323 / 1e-104 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 303 / 1e-97 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 295 / 7e-95 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 294 / 4e-94 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 292 / 7e-93 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.008G111600 [exp] 291 / 1e-91 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.004G153600 [exp] 286 / 1e-90 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 283 / 4e-89 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 279 / 5e-87 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10011678 pacid=23156333 polypeptide=Lus10011678 locus=Lus10011678.g ID=Lus10011678.BGIv1.0 annot-version=v1.0 ATGTTGTCAGGTATCATCCACGGAGGTGATTTAGCTGCGAGGGATCAACAATGTCATCACAACACCGGCGGACACATAATCAACTTTGAAGCTCATGAAT CAACAATGCCCTTTGGCTTTGGCTCATGTTCTGTTGATTCGGGCTGTGTAGTTAATCTATCACTACCGGAGCTGCATTCTTCGCATCTTAGGGGTTTAGG TGGATCTCTTACTTATGAAGAGCTAGCAGTAACTACTAATGGTTTCTCAGAGGGTAATCTTGTTGGGGGAGGCGGATTTGGATACGTCCATAGAGGGGTT CTTTCTAATGGAAAAGAAGTTGCAGTGAAGCAACGGAGGGAAAGAAGGAAGCAAGGGGAGAAGGAGTTTCAGGCGGAGGTTGAAATTATCAGCAGAATAC ATCACAAGCATCTCGTCTCCTTGCTTGGCTACTGCATCCATGGTATCAAGAGGCTACTTTTTTATGAGTTCGTCTCAAATAACACACTGGAATTCCACCT TCAAAGAACATTATGTACCCATCAAGTCGATTACAATATTCCAGGGAATGGAGATGAGGTCATGTCGTGGGAAACTAGATTGAGAATTGCTATTGGGTCT GCTAAAGGACTTGCCTATCTCGATGAGGATTGCGATCCAAAGATCCTTCACCGTGATATCAAGGTGTCTGATTTCGGACTGGCAAGAAGTTATTCTGATG CTTCGATAACTCACGTTTCCACTCAGGTGGTTGGGACTTTTGGGTACTTGGCTCCGGAATATGCATCAAGCGGGAAAGTAACAGAAAAATCAGATGTTTA TTCTTACAGGGTTGTGCTGCTTGAGCTAATAACAGGACGTCCACCGATCTGCTTCTCAGAATCTGTATCAAGAACAAGCTTGGTTGAGTGGGCTAGGCCT TTGCTGACTGGAGCAGTGGAAAGAAGAAACTTCGAAGGTCTTGTCGATCCACGGTTACAAAACACGTATGACAACAGTGAGATGACTCAAATGGTTGCTT GTTCAGCTGTATGCGTCAGGCATTCAGCATGGCTTAGGCCACGGATGAACCAGGTGGTTCATGTGTTGGAAGGAGGCTCAAACTACGACTTCAAGCAGTA CAAGGACGAAATGTTCAAATTCAAGGTCGCGTTGGCGAGTGACCAGTGGGTGTGGTTTAAACTCGTCCATTTCAAACACCGATATGACAACCTCGCCTCG CTACCTAGTTAA
AA sequence Show only first row Show all	>Lus10011678 pacid=23156333 polypeptide=Lus10011678 locus=Lus10011678.g ID=Lus10011678.BGIv1.0 annot-version=v1.0 MLSGIIHGGDLAARDQQCHHNTGGHIINFEAHESTMPFGFGSCSVDSGCVVNLSLPELHSSHLRGLGGSLTYEELAVTTNGFSEGNLVGGGGFGYVHRGV LSNGKEVAVKQRRERRKQGEKEFQAEVEIISRIHHKHLVSLLGYCIHGIKRLLFYEFVSNNTLEFHLQRTLCTHQVDYNIPGNGDEVMSWETRLRIAIGS AKGLAYLDEDCDPKILHRDIKVSDFGLARSYSDASITHVSTQVVGTFGYLAPEYASSGKVTEKSDVYSYRVVLLELITGRPPICFSESVSRTSLVEWARP LLTGAVERRNFEGLVDPRLQNTYDNSEMTQMVACSAVCVRHSAWLRPRMNQVVHVLEGGSNYDFKQYKDEMFKFKVALASDQWVWFKLVHFKHRYDNLAS LPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10011678 [exp]	0	1
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	1.4	0.8467
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10039144 [exp]	12.8	0.7899
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	13.3	0.7837
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	17.5	0.7562
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	18.8	0.7646
AT1G67690			Zincin-like metalloproteases f...		Lus10036925 [exp]	21.6	0.7501
AT4G08310			unknown protein		Lus10028028 [exp]	22.6	0.7411
AT2G15730			P-loop containing nucleoside t...		Lus10042667 [exp]	24.7	0.7205
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Lus10029795 [exp]	29.9	0.7247
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10003615 [exp]	31.0	0.7371

Compare expression of checked genes

Lus10011678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.