Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25752 311 / 7e-107 ATRBL11 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11, rhomboid-like protein 11 (.1) AT5G25640 110 / 2e-30 Rhomboid-related intramembrane serine protease family protein (.1) AT5G07250 56 / 1e-08 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G12750 53 / 5e-08 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT1G52580 52 / 1e-07 ATRBL5 RHOMBOID-like protein 5 (.1) AT1G63120 49 / 2e-06 ATRBL2 RHOMBOID-like 2 (.1) AT2G29050 48 / 3e-06 ATRBL1 RHOMBOID-like 1 (.1.2) AT3G53780 46 / 1e-05 ATRBL4 RHOMBOID-like protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022131 [exp] 464 / 3e-167 AT5G25752 334 / 6e-116 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11, rhomboid-like protein 11 (.1) Lus10024497 [exp] 51 / 4e-07 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 51 / 4e-07 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10003971 [exp] 50 / 8e-07 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10023789 [exp] 50 / 9e-07 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10027436 [exp] 49 / 3e-06 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10005464 [exp] 48 / 5e-06 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10004965 [exp] 47 / 9e-06 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10000628 [exp] 41 / 0.0008 AT5G38510 335 / 3e-112 Rhomboid-related intramembrane serine protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G037300 [exp] 347 / 1e-120 AT5G25752 348 / 5e-121 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11, rhomboid-like protein 11 (.1) Potri.006G086300 [exp] 56 / 1e-08 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.012G139600 [exp] 52 / 1e-07 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.015G142000 [exp] 52 / 1e-07 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.001G241300 [exp] 51 / 5e-07 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.003G122900 [exp] 48 / 3e-06 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 48 / 4e-06 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.009G031900 [exp] 47 / 5e-06 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10011680 pacid=23156339 polypeptide=Lus10011680 locus=Lus10011680.g ID=Lus10011680.BGIv1.0 annot-version=v1.0 ATGCATTTGCCGTTGCAGCTCCACCAACACTACCCGCCATTGCCAAACCCATATTACCCTCCACTATTTTTCCCCACTACAGCTCGCAACTTCTTCCCCA AGCACTTAGCCTTCACTGCTCCAAGATTCTCTCAACCCTTGTTTCCTCATTTACTCCCTTTCTCTTCCCATGCTCCGCTGTCTCGCTTCATTTGCAAGTC GAATGACACAGATATACCGAGGCAGCTTGAACTTGGGAAGCCAGAAGGTAGAAGGAAACCAGAGAGAAAAGTGAATGGGATATTCTGGATTATTCTTGTA AACCTTGGTTTATTCTTAGCTGATCACTTGTTTCAGGTCCGAGCCATCAAATCTCTCTACTTGTATCACAATTGGCCTGCTTGGTATCAGTTTGTCACTG CAACGTTTTGCCACGCCAGTTGGGAACATCTTTCAAGCAACCTGTTCTTCCTCTACATATTTGGGAAGCTTGTTGAAGAAGAAGAAGGAACGTTTGGTCT GTGGTTTTCATACATTCTTACTGGTGTTGGGGCGAATCTTGTTTCATGGTTAGTTTTGCCTAGGAACTCTGTATCAGTTGGAGCTTCAGGTGCTGTTTTC GGATTGTTCGCTATTAGTGTACTTGTAAAGTTAACGTGGGACTGGAGAAAGATCATTGAAGTGCTGATATTGGGCCAATTTGTAGTGGAGAAGGTAATGG AGGCAGCTCAATCTTCAGCAGCAATGTCAGGAAGCTTAGGTGGAGCAGGTCAGGGTGTAAACCATATTGCACATCTCTCTGGTGCTCTAATTGGCGTCAT TCTCGTCTGGCTCGTCAGCAAAATCCCTGCTGCTCGCACAGATGATTGA
AA sequence Show only first row Show all	>Lus10011680 pacid=23156339 polypeptide=Lus10011680 locus=Lus10011680.g ID=Lus10011680.BGIv1.0 annot-version=v1.0 MHLPLQLHQHYPPLPNPYYPPLFFPTTARNFFPKHLAFTAPRFSQPLFPHLLPFSSHAPLSRFICKSNDTDIPRQLELGKPEGRRKPERKVNGIFWIILV NLGLFLADHLFQVRAIKSLYLYHNWPAWYQFVTATFCHASWEHLSSNLFFLYIFGKLVEEEEGTFGLWFSYILTGVGANLVSWLVLPRNSVSVGASGAVF GLFAISVLVKLTWDWRKIIEVLILGQFVVEKVMEAAQSSAAMSGSLGGAGQGVNHIAHLSGALIGVILVWLVSKIPAARTDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10011680 [exp]	0	1
AT3G09860			unknown protein		Lus10001400 [exp]	11.3	0.7683
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10042038 [exp]	18.2	0.7558
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	18.2	0.7608
AT4G37020			unknown protein		Lus10000435 [exp]	29.1	0.7477
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Lus10029397 [exp]	32.3	0.7409
AT4G03090			sequence-specific DNA binding;...		Lus10006937 [exp]	35.5	0.7474
AT1G26880			Ribosomal protein L34e superfa...		Lus10042199 [exp]	43.3	0.7292
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Lus10034152 [exp]	45.8	0.7126
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10043263 [exp]	47.1	0.7400
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10029059 [exp]	56.7	0.7146

Compare expression of checked genes

Lus10011680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.