Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011681 pacid=23156327 polypeptide=Lus10011681 locus=Lus10011681.g ID=Lus10011681.BGIv1.0 annot-version=v1.0 ATGGATCTACAGACTCTGGAATGGATGTGTTTGATGCTCGAGTCAGTCTTGAATCAAGGAGCTTCAGTCACAAATGAAACAGAGTTTGGAGGATACAACT TTCAACCACAAGTTGCCATGAATCGGCTCACTAGCACCTTCTCTGATTTTCCAGACTTGGACTTGGCTGTGAGGATCGATGGGGTGCTGGCAACAGTGAC GGGGGTGCTCCGTGCACAACAGGTTTTCGTCGTGTTGGATATCTGTTTGGTAATGCCACAGGAGGGGGTATTGGACTCTTCTGATGATGATTCTGATTCT GATCTTTCTGATGAAGATTATGGTGTTGAGATAATACCAGCTTAA
AA sequence Show only first row Show all	>Lus10011681 pacid=23156327 polypeptide=Lus10011681 locus=Lus10011681.g ID=Lus10011681.BGIv1.0 annot-version=v1.0 MDLQTLEWMCLMLESVLNQGASVTNETEFGGYNFQPQVAMNRLTSTFSDFPDLDLAVRIDGVLATVTGVLRAQQVFVVLDICLVMPQEGVLDSSDDDSDS DLSDEDYGVEIIPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011681 [exp]	0	1
AT5G39650		DAU2	DUO1-activated unknown 2, Prot...		Lus10012821 [exp]	2.2	0.9685
AT5G51890			Peroxidase superfamily protein...		Lus10038054 [exp]	6.3	0.9518
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030439 [exp]	10.6	0.9585
AT1G35210			unknown protein		Lus10036476 [exp]	14.8	0.9656
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041511 [exp]	15.2	0.9590
AT4G39720			VQ motif-containing protein (....		Lus10016814 [exp]	15.5	0.9305
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10022303 [exp]	20.1	0.9550
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012583 [exp]	20.6	0.9533
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10034300 [exp]	22.0	0.9410
AT4G08250	GRAS		GRAS family transcription fact...		Lus10008316 [exp]	27.8	0.9525

Compare expression of checked genes

Lus10011681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.