Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32720 369 / 2e-123 ATLA1 La protein 1 (.1.2) AT1G79880 228 / 3e-69 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) AT5G46250 73 / 8e-14 RNA-binding protein (.1.2.3) AT2G43970 68 / 9e-12 RNA-binding protein (.1.2) AT3G19090 50 / 3e-06 RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022135 [exp] 711 / 0 AT4G32720 389 / 6e-133 La protein 1 (.1.2) Lus10038624 [exp] 432 / 4e-147 AT4G32720 360 / 3e-121 La protein 1 (.1.2) Lus10038494 [exp] 73 / 1e-13 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10023315 [exp] 73 / 1e-13 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10025608 [exp] 66 / 4e-11 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10027080 [exp] 65 / 7e-11 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10043191 [exp] 63 / 5e-10 AT5G50850 635 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10012058 [exp] 55 / 1e-07 AT3G19090 427 / 2e-146 RNA-binding protein (.1) Lus10010261 [exp] 50 / 5e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G241800 [exp] 389 / 2e-130 AT4G32720 403 / 3e-138 La protein 1 (.1.2) Potri.018G037900 [exp] 376 / 1e-125 AT4G32720 382 / 6e-130 La protein 1 (.1.2) Potri.007G144800 [exp] 69 / 4e-12 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.017G007400 [exp] 68 / 7e-12 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.011G080700 [exp] 64 / 1e-10 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.009G106500 [exp] 64 / 2e-10 AT3G19090 348 / 1e-116 RNA-binding protein (.1) Potri.004G144700 [exp] 61 / 1e-09 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.010G209701 [exp] 44 / 0.0002 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF08777 [flax] [poplar] RRM_3 RNA binding motif CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0123 [flax] [poplar] HTH PF05383 [flax] [poplar] La La domain
Representative CDS sequence Show only first row Show all	>Lus10011685 pacid=23156322 polypeptide=Lus10011685 locus=Lus10011685.g ID=Lus10011685.BGIv1.0 annot-version=v1.0 ATGCAATTCGGAGTCCCGAAGCTGAAGAAATCCATTTCAGAACTTCCATTCGGTATCACCAGCATTGCTGAATTTTACGACGGTGGAGAGTTCTTGAGTC TCGGAGCTCCAGGTTTCTCATATCCATTAAACTCGATTCTACCCTCGTGCTTCCATATCCGCTATTCCAACGACTCGACGTTCATTCTCGCACTTTCCGA AGTAATACTCGGTACGAAACCTCGTGAACACGACCTCGGTTTTACCGAGTTTATCTTTGAACTCGCCTTCGGGTGTGATCAAATTTTGGCGCCATTGTCG GGGACCTCGTTTCATTTGTACGAAAAAGTGGAGTTTTACTTCAGCGACAGCAATCTCCCCCGGGACAAGTTCTTGACAGAAACGGTTACTTCCAGCGAAG ATGGCATGGTCAGCCTGGCTCTTATATGCTCTTTCGCGAAAATGAGGGGCTATTTAAAATTGGGGGAGGTCAAGCCGGATGACGTTACGGAGGATACTTT GAAGGCTGTGGCTGAAGTTCTTGCGAAGTCTGCTTCTGTTAAGCTTTCTGACGATGGAAAGAAAGTTGGTAGAGTTTCTCCACTGATGAAACCAGAAGAG CTAGTGGAGCAACTGGATGGAAGGACGGTTGCTGTGTCCCCGTTGCCTTTTGATGCTAATCGCGAAGCAGTGCGGTCATTTTTCAGTCAGTATGGCACGG TCAATAGTGTTAGATTGCCTAACCATTTTGCTGACAGAAAGGTGTTCAGTGGTACTGCTTTGGTGGAGTTTTCAACTGATGACGAGGCTGAGAAGGTTCT TGGTCTAAATTTCCTGACCTTTGCAGGCGCAGAGCTAGAACTGAAACCAAAGAAGAAATTTGATGTAGAAACAGCTCAGAAGGCAGAGGAGCACAAAGCT GCCAATCCTCAATGGAAAGAAGACCATCAGAATAAGGCAAATCCAAAAGACAACTATCCAAAGGGTTTGATTGTTGCTTTTAAATTGAAGAGCTTATCAA CTGGAGAGGAACCAGAACAGAATAATAATGGGTTATCGGTTAATAGTGATTTGACTGATAATAAACCAGAGGAATCTTTACCTTCTGAAGAAAGCCAGGA GAAGGCACCAGAAGATGCTAATAACAAGGAAGAAACTGCCGCTATGGATACCGAGAATGTGGAAGAGGGTGATAAAGAAAAGGGAAGTGAAGACAAACAA AACAAGATCGATGAAGAGCCGTCTAAAGATGCTGTTGAAAAGAAGGGTAAATTTGACCTTGCTGCCTGCAAGGATGATAAGAATGTTGTGCTGCGTGAGG ATCTGAAGGTCGTGTTTGCTAAATTTGGCAATGTCAAGTACATTGATTTTCAGATTGGAGAGGATTCAGGATTTGTCAGATTTGAGAACCCTGAAGGAGC TCAGAAAGCTCGTGCTGCTGCAGTATTAGCGACAGAAGATGGACTGATTGTTAAAAACTTTGTTGCCACTTTAGAACCAGTAACTGGCGAGGCTGAAAAG GACTACTGGAACCGGCTCCGTGACAATCAAGATAAGCACAAAGATAACCGAGGGAGGGGAGGAAGGTTCCACAATAGAGGTGGTGGTGGTAAGAACCATC GTTGGAGGGACAATGATTCTGGCAGAGGACGTGGCCGTAACAAGTTTCAGAAGGTTGGGGCATGA
AA sequence Show only first row Show all	>Lus10011685 pacid=23156322 polypeptide=Lus10011685 locus=Lus10011685.g ID=Lus10011685.BGIv1.0 annot-version=v1.0 MQFGVPKLKKSISELPFGITSIAEFYDGGEFLSLGAPGFSYPLNSILPSCFHIRYSNDSTFILALSEVILGTKPREHDLGFTEFIFELAFGCDQILAPLS GTSFHLYEKVEFYFSDSNLPRDKFLTETVTSSEDGMVSLALICSFAKMRGYLKLGEVKPDDVTEDTLKAVAEVLAKSASVKLSDDGKKVGRVSPLMKPEE LVEQLDGRTVAVSPLPFDANREAVRSFFSQYGTVNSVRLPNHFADRKVFSGTALVEFSTDDEAEKVLGLNFLTFAGAELELKPKKKFDVETAQKAEEHKA ANPQWKEDHQNKANPKDNYPKGLIVAFKLKSLSTGEEPEQNNNGLSVNSDLTDNKPEESLPSEESQEKAPEDANNKEETAAMDTENVEEGDKEKGSEDKQ NKIDEEPSKDAVEKKGKFDLAACKDDKNVVLREDLKVVFAKFGNVKYIDFQIGEDSGFVRFENPEGAQKARAAAVLATEDGLIVKNFVATLEPVTGEAEK DYWNRLRDNQDKHKDNRGRGGRFHNRGGGGKNHRWRDNDSGRGRGRNKFQKVGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10011685 [exp]	0	1
AT5G19300			unknown protein		Lus10034063 [exp]	1.0	0.9547
AT1G77030			hydrolases, acting on acid anh...		Lus10018941 [exp]	1.4	0.9504
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	9.0	0.9501
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10019634 [exp]	9.2	0.9361
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10024286 [exp]	9.5	0.9417
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	12.2	0.9470
AT4G39200			Ribosomal protein S25 family p...		Lus10040436 [exp]	12.3	0.9445
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	12.4	0.9326
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10032212 [exp]	13.0	0.9446
AT4G11120			translation elongation factor ...		Lus10016073 [exp]	13.5	0.9400

Compare expression of checked genes

Lus10011685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.