Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011686 pacid=23156315 polypeptide=Lus10011686 locus=Lus10011686.g ID=Lus10011686.BGIv1.0 annot-version=v1.0 ATGCCACTGGAGGGAGGGAAAGGGATAGGAGGGAGGAGATCAAGGAGGGGCGCAAATCTCAATGGAGGCAGCAGGAAATGGTGTGAGAATGGGCGCAAAT CTCAATGTTCTTCTTGCTATCTCAATAGGGAGGGAGGGAAAGGGATAGGAGGGAGGAGATCAAGGAGGGGCGCAAATCTCAATGGAGGCAGCAGGAAATG GTGTGAGAATGGGCGCAAATCTCAATGTTCTTCTTGCTATCTCAATAGGGAGGGAGGGAAAGGGATAGGAGGGAGGAGATCAAGGAGGGGCGCAAATCTC AATGGAGGCAGCAGGAAATGGTGTGAGAATGGGCGCAAATCTCAATGTTCTTCTTGCTATCTCAATAGGGAGGGAGGGAAAGGGATAGGAGGGAGGAGAT CAAGGAGGGGCGCAAATCTCAATGGGGGCAGCAGGAAGTGGTGTGAGAATCGGCACAAATCTCAATGTTCTCTTGCTATCTCAACAGGGAGGGAGGGAGG GAACCATCAAGTACGGGGAGGGCAGAGGAAATGTATAATGCTTGTTTCAGCATCAAATCTATAG
AA sequence Show only first row Show all	>Lus10011686 pacid=23156315 polypeptide=Lus10011686 locus=Lus10011686.g ID=Lus10011686.BGIv1.0 annot-version=v1.0 MPLEGGKGIGGRRSRRGANLNGGSRKWCENGRKSQCSSCYLNREGGKGIGGRRSRRGANLNGGSRKWCENGRKSQCSSCYLNREGGKGIGGRRSRRGANL NGGSRKWCENGRKSQCSSCYLNREGGKGIGGRRSRRGANLNGGSRKWCENRHKSQCSLAISTGREGGNHQVRGGQRKCIMLVSASNL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011686 [exp]	0	1
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10016660 [exp]	5.0	0.9667
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	8.8	0.9652
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	10.8	0.9652
					Lus10005830 [exp]	12.5	0.9652
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	14.0	0.9652
AT3G56800		ACAM-3, CAM3	calmodulin 3 (.1)		Lus10042597 [exp]	15.0	0.8442
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	15.3	0.9652
					Lus10009618 [exp]	16.5	0.9652
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	17.7	0.9652
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10006740 [exp]	19.0	0.8811

Compare expression of checked genes

Lus10011686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.