Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32760 228 / 2e-65 ENTH/VHS/GAT family protein (.1.2) AT3G08790 204 / 4e-57 ENTH/VHS/GAT family protein (.1) AT1G76970 168 / 1e-45 Target of Myb protein 1 (.1) AT1G21380 167 / 2e-44 Target of Myb protein 1 (.1) AT5G01760 139 / 1e-34 ENTH/VHS/GAT family protein (.1) AT2G38410 135 / 7e-33 ENTH/VHS/GAT family protein (.1) AT5G63640 115 / 2e-27 ENTH/VHS/GAT family protein (.1) AT5G16880 78 / 2e-15 Target of Myb protein 1 (.1.2.3) AT1G06210 57 / 1e-08 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022140 [exp] 525 / 8e-179 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10018948 [exp] 162 / 2e-43 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10028649 [exp] 162 / 8e-42 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10022753 [exp] 158 / 7e-41 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 157 / 3e-40 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10029739 [exp] 154 / 5e-40 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10014155 [exp] 153 / 4e-39 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10042770 [exp] 150 / 9e-39 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1) Lus10012506 [exp] 115 / 3e-27 AT5G63640 445 / 1e-154 ENTH/VHS/GAT family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G039100 [exp] 238 / 3e-69 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.006G241000 [exp] 233 / 2e-67 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G184900 [exp] 168 / 5e-45 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.002G075500 [exp] 167 / 1e-44 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.006G106500 [exp] 165 / 3e-43 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.016G131900 [exp] 165 / 6e-43 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 116 / 1e-27 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 115 / 2e-27 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 115 / 2e-27 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.013G082500 [exp] 86 / 1e-17 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10011689 pacid=23156319 polypeptide=Lus10011689 locus=Lus10011689.g ID=Lus10011689.BGIv1.0 annot-version=v1.0 ATGGTGAACCCTATGGTTGAAAGGGCTACCAGTGACATGCTGATCGGCCCTGATTGGGCTATGAATATTGAGATCTGCGACATGTGCAACCACGACCCTG GGCAATTTGAGTCCTTGCTTTTCCTGCAATTCAGCGACGGTGTGTCTTTGATCCAACAACAAGCAAAAGAAGTCGTTAAAGGCATAAAGAAGCGTTTGGG GAGTAAGAATTCCAAAGTTCAACTTCTTGCTTTGACATTGTTGGAGACTATCATAAAGAATTGTGGGGACATTGTCCACATGCAAGTGGCAGAAAAGGGT TTGCTCCATGACATGGTGAAAATAGCAAGGAAAAAGCCGGACTTGCATGTAAAGGAGAAGATTTTGTCCTTAATTGATACATGGCAAGAAGCTTTTGGAG GGCCTAGAGCAAGATATCCTCAATATTATGCAGCGTACCAGGAACTCTTGCGCGCTGGGGCAGTGTTTCCTCAGAGAACAGAGCAGTTAGCACCGGTTCT CACACCTCCACAAACACAACCGCTGACGTCTTACCCCCAGAAGCTAAGAAATCCTGAGTTCAGATCAGAGCCAGCTGAATCTTCTGAGTCCGAGTTCCCA ACCTTAAGGGATGAATCTCTACTGTGTCAAGGATTGGCACTGAATGATGACTTACAACGTGTTCTAGCCAAACACGAGGGCATTGCTTCTGGAACTGCTG CTGCAAAAGATAAGCCAAAGTCAAATCCTCAACCTAGTGGGAGTCTCGTAGACGTAGATGGCCCGCTAGTTGATGTTGGACATTCCGGCAAACAGCCTAA TCGAGAATCTCCTACAAGTTCAGGTGCAGCCAATCAGCCATTTAATCAGCTATTGCTTACAGCACCTCCGGCAGCCAACGGCCCAGCTCCTCCGTCAGCA GCCAACCCTAAGATGGATCTGTTAAGCGGTGATGACTTCAGCTCACCAAAGGCTGCTGACACTTCACTTGCTCTTGTTCCTGTTGGAGAAACACAGCCAA CTGCTTCTCCTTCTCAGCAGAATGCACTTGTTCTATTTGACATGTTTTCGGACAATCAACCAAATGGTGTGAACAATCCTCCAAATGGTGTCACTGTGCA GCAGCAGCCTACCCATCTGGATGGTCAGAATAACCCCATGGCCCAACAATTCCAACAACAACCAAATTTCCAATCTCTTGATTCTGGGATGTACCCTAAT GGAACAACATCAAATATGGGGTCACCACGATATGAGCAGTCACCATTTATGCAAGGTTCTGTTCCTGCCTGGAATGGGCAACTCGTCCAACAACAGCAAC AGCCAGCCTCTCCAGTTTATGGTTCACAAAGTGGGGGGTCACTACCTCCACCACCGTGGGAGGCTCAGGCGGGAGCAGGAGATGGTATGGGAAGCCCGGT GGGAGGATCTCAATACCCTTCCCAGCCAATGGCAGTAACTCAAGTCGTGGTGACCCATAGTCAACCGATGGGAAGCCCTATGGGAACAATGGGAAACGAT CCTGGTGTGGGAATCTACATTCAGCCCGGTTCAAACGGCTCACCTATATCAGCAGCTGGGCAGGCCAATCCATATTTTGGAATGCAGCCACAGGGTGGAG GGCAGTACATGGGGATGGGGATGGGAATGGGAATGGTCCCGCAACAAATGCAAGCAGCTGGTGGTTATATGAATCCATCCATGTATCTTCAACAGCAACA ACAGCAACAGCAACAGGCGATGATGTATAACAACCAAATGCAAGCAGCAGGAGGATATGGTGGTGGTGGTGGTATGTACAGACAGCAGCAGCATCAGCTG ACTCCGCAGCAGCAGCGCTACTTGGAGCAGAAAATGTACGCAATGTCACTGAGAGACGACAGCAGCAGTTTGAGAAGCTCTACAGGTGGTGGTGGTTATG GGATGCCGTCAAATTCTGAGTCTTTAGTCCCATCTGCAAAACCCGCAAAGCCAGAAGATAAGCTGTTTGGTGACCTTGTGGACCTAACTAAGTTCAAGCC AGGGAAAACCTAA
AA sequence Show only first row Show all	>Lus10011689 pacid=23156319 polypeptide=Lus10011689 locus=Lus10011689.g ID=Lus10011689.BGIv1.0 annot-version=v1.0 MVNPMVERATSDMLIGPDWAMNIEICDMCNHDPGQFESLLFLQFSDGVSLIQQQAKEVVKGIKKRLGSKNSKVQLLALTLLETIIKNCGDIVHMQVAEKG LLHDMVKIARKKPDLHVKEKILSLIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRTEQLAPVLTPPQTQPLTSYPQKLRNPEFRSEPAESSESEFP TLRDESLLCQGLALNDDLQRVLAKHEGIASGTAAAKDKPKSNPQPSGSLVDVDGPLVDVGHSGKQPNRESPTSSGAANQPFNQLLLTAPPAANGPAPPSA ANPKMDLLSGDDFSSPKAADTSLALVPVGETQPTASPSQQNALVLFDMFSDNQPNGVNNPPNGVTVQQQPTHLDGQNNPMAQQFQQQPNFQSLDSGMYPN GTTSNMGSPRYEQSPFMQGSVPAWNGQLVQQQQQPASPVYGSQSGGSLPPPPWEAQAGAGDGMGSPVGGSQYPSQPMAVTQVVVTHSQPMGSPMGTMGND PGVGIYIQPGSNGSPISAAGQANPYFGMQPQGGGQYMGMGMGMGMVPQQMQAAGGYMNPSMYLQQQQQQQQQAMMYNNQMQAAGGYGGGGGMYRQQQHQL TPQQQRYLEQKMYAMSLRDDSSSLRSSTGGGGYGMPSNSESLVPSAKPAKPEDKLFGDLVDLTKFKPGKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	0	1
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10038872 [exp]	2.0	0.9247
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006879 [exp]	2.2	0.9335
AT3G48860			unknown protein		Lus10036015 [exp]	3.5	0.9308
AT4G32760			ENTH/VHS/GAT family protein (....		Lus10022140 [exp]	5.2	0.9120
AT5G26990			Drought-responsive family prot...		Lus10015412 [exp]	5.4	0.8929
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	6.0	0.9250
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10037621 [exp]	8.1	0.9195
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10019855 [exp]	8.4	0.8753
AT3G05940			Protein of unknown function (D...		Lus10001058 [exp]	9.7	0.8858
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008491 [exp]	9.9	0.9107

Compare expression of checked genes

Lus10011689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.