Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11560 1364 / 0 catalytics (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022144 [exp] 1552 / 0 AT5G11560 1116 / 0.0 catalytics (.1) Lus10022143 [exp] 179 / 1e-52 AT5G11560 144 / 5e-41 catalytics (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G039800 [exp] 1519 / 0 AT5G11560 1419 / 0.0 catalytics (.1) Potri.006G240300 [exp] 1489 / 0 AT5G11560 1387 / 0.0 catalytics (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07774 [flax] [poplar] EMC1_C ER membrane protein complex subunit 1, C-terminal
Representative CDS sequence Show only first row Show all	>Lus10011690 pacid=23156320 polypeptide=Lus10011690 locus=Lus10011690.g ID=Lus10011690.BGIv1.0 annot-version=v1.0 ATGGGCACCACGCTTAGGGTTTTCCTTCTCCTCCTCTCGCTTTTATTCATTACAGCTCCTGCCTTCTCTCTTTACGAAGATCAAGCTGGCCTCGCCGACT GGCATCAGAAGTACATAGGCAAAGTGAAGGATGCTGTCTTTCACACGCAAAAAACTGGTAGAAAGCGAGTTGTGGTTTCAACTGAAGAGAATGTTATTGC TTCTCTAGATCTTAGACATGGCGAGATTTTCTGGAGACATGTTCTGGGAACCAATGATGCTGTTGATGGAATAGATATCGCAATGGGTAAATATATCATT ACCCTTTCATCCAACGGCAGTATCCTGAGAGCCTGGAACCTTCCAGATGGCCAAATGGTGTGGGAATCATATCTTCAAGGTCCTTATTCCTCAAAGTCTT CATTGTTTGTACCGCAGGCTAGCTTGAGAGCTGACACGGACAGTGCAGTCCTTGCTTTTGGTAAAGGTTTCCTTCATGCAGTTTCTAGCATTCATGGAGA GATTCTCTGGAAAACGGATATTGGGGCAGAAAGCTTTGAATTTCAACATATGGTCCATGCCCCTAACACTAATGTTATACATTTGATTGGGTTTGTTGGC TCAACCCACTTTGATGTTTACACAATTGATGCCAAGAGCGGAGAGCTACTAAAGCACAAGACTGCAGCTATTCCAGACGGCTCTTCAGGGAAAGCTTCTT TAGTTTCAAGTAACACACTTGCAGTCATGGATTCAACTGGTTCAACTATGACAACAATTAATTTCAAGGATGGAGAAATTACATTTAACAGAACACCTGT TTCCACCCTCATTGAGGACTTTGCCGGGGTGGCAATGTTATTGCCTCTAAAACTTGAAAGAATATTTGCACTGAAAACTGGTATTCTGACTACATTTGTA AGAGTGACTATTGAAGGGAAGTTTGAGGTGGCAGATAAAATCGAACATGCAACAGCTGTTAGCGATGCTCTGCCATTTTCAGAGGATCGCCAAGCTTTTG CATATGTCCAGCATAGAAGCAATGATATTCATTTAACAGTGAAGCTTAGTGCAGATTGGAACCATGATTTGCTTGAGGGGAACATTAAGATGGACCAAGA TAGAGGGTCTGTCCATAAGGTATTCATTAACAACTACATCAGGACAGACAAGTCTCATGGTTTCAGGGCTTTGATTGTTATGGAAGATCACTCTTTGTTG CTGCTTCAACAAGGGGCTGTCGTTTGGAGTAGGGAAGATGCACTGGCTTCAATAGTTGATGTCAAAACATCAGAACTTCCTGTTGAAAAGAAAGGCGTTT CAGTTGCAAAAGTTGAGGAGACTCTTTTTGAGTGGCTTCAGGGACATGTGCTTAAGCTTAAAGGAACATTGATGATTGCAAACCCTGATGACATGGCTGC CATTCAAGCCTTGCGATTGAAAAGCTCTGGGAAAAGTAAGATGACTCGGGACCACAATGGATTTCGGAAGTTGCTCATTGTGCTTACAAAAGCTGGGAAA GTTTTTGCCTTGCATACTGGAGATGGTAGGATTGTTTGGTCTAACTTACTGAGTTCTCTGCGCAAATCAGAAATCTGTGCAAATCCTACTGCGCTCAATC TGTTCCAGTGGCACGTTCCTCATCACCATGCAATGGATGAGAATCCATCTGTTCTAGCTGTCAGTCGTTGTGGACCGAGTTATGATACTCTAGGAGTGCT TTCTTTCGTCGATACTTACACTGGAGAGGAGCTTAGTTCGTTGAGTCTTGAACATTCTGTTGTGCAAGTCATTCCTCTCCAACTTATGGATTCAACTGAA CAACGTCTACATCTGCTAATAGATGCTGATGGACAAGCTCATTTGTATCCTAAGACATCCGATGCTCTCGGTGTTTTCCAACATGAGTTGTCAAACATTT ATTGGTATTCAATTGAAGCTGAGGCAGGTATCATGAAGGGTTACGCTCTGAAAAGCAAGTATGTTGATCAAGTTTTGGATGAGTATTCTTTTGATACCAG AAGTATATGGTCAATTGTTTTCCCCTCGGAGTCAGAAAAGATCATAAAAACAGCAACAAGAAAATTGAATGAGGTTGTTCATACCCAAGCAAAGGTCATA GCAGATCAAGACGCAATGTTCAAATACATATCAAAGAATTTACTCTTTGTTGCTACTATTGCACCAAAAGCCAGTGGTGATATTGGATCTTCCACCCCAG ACGAATCATGGCTGATTATCTACCTTGTTGATACCATAACAGGCCGTATATTGCACCGCATGACTCATCATGGGGCCCAAGGTCCAGTTGAGGCGGTTGT TAGCGAGAACTGGGTTGTGTATCACTACTTCAATCTTCGAGCACACAGATATGAGATGTCAGTGATTGAAATCTACGATCAATCTCGGGCGGACAACAAA GACGTCTGGAAGCTGATCCTAGGAAAGCATAATCTGACTTCACCAGTATCTTCTTATTCCCGACCAGAGGTGATGACAAGGTCACAGTCGTATTTCTTCT CTCATTCTGTAAAATCGATAGCGGTAACATCTACAGCAAAGGGCATTACTTCAAAGCAACTTCTTATCGGTACAGTTGGTGACCAGGTTTTGACTCTGGA TAAGCGTTTCTTGGATCCTCGTAGATCCATCAACCCCACACAAGCAGAAAAGGAGGAAGGAATCATTCCTCTGACTGATGCACTGCCCATCATCCCTCAG TCGTATATCACACACGCCCTAAAAGTGGAAGGCCTGAGAGGCATCGAGACTGTACCAGCAAAGCTAGAGTCAACCACCCTTGTTTTTGCGTATGGAGTTG ATCTCTTCTTCACTCGGTTTGCACCGTCGAGGACGTACGACTCACTGACAGAAGACTTCAGCTACGCACTATTGCTGCTGACCATTTTTGCACTGGTGGC AGCCATTTTCATCACTTGGATTGTGTCGGAGAAGAAAGAACTGAGAGACAAGTGGAGGTGA
AA sequence Show only first row Show all	>Lus10011690 pacid=23156320 polypeptide=Lus10011690 locus=Lus10011690.g ID=Lus10011690.BGIv1.0 annot-version=v1.0 MGTTLRVFLLLLSLLFITAPAFSLYEDQAGLADWHQKYIGKVKDAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGTNDAVDGIDIAMGKYII TLSSNGSILRAWNLPDGQMVWESYLQGPYSSKSSLFVPQASLRADTDSAVLAFGKGFLHAVSSIHGEILWKTDIGAESFEFQHMVHAPNTNVIHLIGFVG STHFDVYTIDAKSGELLKHKTAAIPDGSSGKASLVSSNTLAVMDSTGSTMTTINFKDGEITFNRTPVSTLIEDFAGVAMLLPLKLERIFALKTGILTTFV RVTIEGKFEVADKIEHATAVSDALPFSEDRQAFAYVQHRSNDIHLTVKLSADWNHDLLEGNIKMDQDRGSVHKVFINNYIRTDKSHGFRALIVMEDHSLL LLQQGAVVWSREDALASIVDVKTSELPVEKKGVSVAKVEETLFEWLQGHVLKLKGTLMIANPDDMAAIQALRLKSSGKSKMTRDHNGFRKLLIVLTKAGK VFALHTGDGRIVWSNLLSSLRKSEICANPTALNLFQWHVPHHHAMDENPSVLAVSRCGPSYDTLGVLSFVDTYTGEELSSLSLEHSVVQVIPLQLMDSTE QRLHLLIDADGQAHLYPKTSDALGVFQHELSNIYWYSIEAEAGIMKGYALKSKYVDQVLDEYSFDTRSIWSIVFPSESEKIIKTATRKLNEVVHTQAKVI ADQDAMFKYISKNLLFVATIAPKASGDIGSSTPDESWLIIYLVDTITGRILHRMTHHGAQGPVEAVVSENWVVYHYFNLRAHRYEMSVIEIYDQSRADNK DVWKLILGKHNLTSPVSSYSRPEVMTRSQSYFFSHSVKSIAVTSTAKGITSKQLLIGTVGDQVLTLDKRFLDPRRSINPTQAEKEEGIIPLTDALPIIPQ SYITHALKVEGLRGIETVPAKLESTTLVFAYGVDLFFTRFAPSRTYDSLTEDFSYALLLLTIFALVAAIFITWIVSEKKELRDKWR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11560			catalytics (.1)		Lus10011690 [exp]	0	1
AT5G11560			catalytics (.1)		Lus10022144 [exp]	1.4	0.9419
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10017184 [exp]	3.3	0.8959
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026726 [exp]	4.2	0.9275
AT5G11560			catalytics (.1)		Lus10022143 [exp]	4.5	0.9406
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10013253 [exp]	8.5	0.9130
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Lus10023270 [exp]	12.0	0.8513
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	13.0	0.8970
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	15.0	0.8969
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001585 [exp]	15.3	0.9100
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	18.0	0.9051

Compare expression of checked genes

Lus10011690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.