Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11550 120 / 3e-33 ARM repeat superfamily protein (.1) AT1G49780 51 / 2e-07 PUB26 plant U-box 26 (.1) AT3G19380 40 / 0.0008 PUB25 plant U-box 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014073 [exp] 53 / 2e-08 AT1G49780 281 / 2e-92 plant U-box 26 (.1) Lus10019842 [exp] 52 / 5e-08 AT1G49780 276 / 3e-92 plant U-box 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240400 [exp] 171 / 4e-52 AT5G11550 179 / 1e-53 ARM repeat superfamily protein (.1) Potri.004G140100 [exp] 57 / 9e-10 AT1G49780 517 / 0.0 plant U-box 26 (.1) Potri.009G100200 [exp] 54 / 1e-08 AT1G49780 515 / 0.0 plant U-box 26 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011691 pacid=23156316 polypeptide=Lus10011691 locus=Lus10011691.g ID=Lus10011691.BGIv1.0 annot-version=v1.0 ATGCGCCTCATCGTCGCCAATTTGAGGAACAAGGCCGCCGCCAAGACCGCCACCAAGATCCTCCTCGCGCTTTGCCTGGCCGAGCCCAATCGCCACGTGG CTGTCCAGGCAGTGGCGGTAGGGACCATCGTGGAGGTCGCCATGGAGCTCGAAGGTCCCGTCGCCGAGCGCGCGCTGGCGGTGCTAGAGCTGGCCTGCAC GGTGGAGGAAGGGGCAGCGGCGCTGAGATCCCACGCGCTGGCGGTGCCGGTGATGGTAACCATGATGGGGAAGATGACTGGGAGGGGCCAGGAATACGCC ATCAGCGCTCTCGCCGTGATTTACGGCGGAGGAGGTATGGGCGTGCAGGGAAGGTGTAATGGGGAGGAGGAAGAGGAAAGTGCGAACCACGCTCCACCGG AGGAGGTGGCCCGTGCGGTGGAGTTGGCACTACAAGGGGAGTGTACAGTACGAGGGAGGAGGAAAGGGGTACAACTGCTTAAGGCGCTGGAAGAGTACGG AAGGAGTGATATTGATGTAGCGGCGGAGGCGGAAGATGTAGGTGGTGGAGATCAAGAGGAGGAAGAGGAAGAGGAGAAGCGAAGAATATTGGGTGGGGAT TAG
AA sequence Show only first row Show all	>Lus10011691 pacid=23156316 polypeptide=Lus10011691 locus=Lus10011691.g ID=Lus10011691.BGIv1.0 annot-version=v1.0 MRLIVANLRNKAAAKTATKILLALCLAEPNRHVAVQAVAVGTIVEVAMELEGPVAERALAVLELACTVEEGAAALRSHALAVPVMVTMMGKMTGRGQEYA ISALAVIYGGGGMGVQGRCNGEEEEESANHAPPEEVARAVELALQGECTVRGRRKGVQLLKALEEYGRSDIDVAAEAEDVGGGDQEEEEEEEKRRILGGD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11550			ARM repeat superfamily protein...		Lus10011691 [exp]	0	1
AT4G15140			unknown protein		Lus10010477 [exp]	2.0	0.9450
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	3.3	0.9498
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	4.9	0.9448
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	6.0	0.9425
AT4G02800			unknown protein		Lus10042577 [exp]	7.7	0.9298
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	8.8	0.9381
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10013931 [exp]	11.0	0.9307
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10032528 [exp]	11.2	0.9404
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	12.4	0.9331
AT3G09510			Ribonuclease H-like superfamil...		Lus10000349 [exp]	13.1	0.9139

Compare expression of checked genes

Lus10011691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.