Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11530 57 / 1e-07 EMF1 embryonic flower 1 (EMF1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009490 [exp] 2129 / 0 AT5G11530 63 / 1e-09 embryonic flower 1 (EMF1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240500 [exp] 461 / 1e-140 AT5G11530 281 / 5e-78 embryonic flower 1 (EMF1) (.1) Potri.018G039500 [exp] 381 / 1e-111 AT5G11530 187 / 7e-48 embryonic flower 1 (EMF1) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011692 pacid=23156311 polypeptide=Lus10011692 locus=Lus10011692.g ID=Lus10011692.BGIv1.0 annot-version=v1.0 ATGGAGAGAAGCAACACTGATACTGTCGTGGAAGCTGGCAAGACTGATGCTGTACACAAGGCTATGGATTCTCCAATTAAGATTAAATCAATATGCATAG AGCTCAATGCTTCGAAGGGGAATAACGTTGCAGAAGACTGCAACCATTTCTCTATACGTGGATATGTATCTGAAATCCGCGAGAAAGACATCAGCAAGAG CTGGCCATTTGATTTGCCAGACACACACAGTAAAGATTGTGACGAGGATGATCGGGAGCTTCCTCCTTTAGAAGAACGGAGATTTAGATACTGGCGTTGT GAGAGCTGCATGCAGAGAATTGGCCAGCCAGTTGAAACTGTAAAACATCCTGCAGTTCCTCTTAGGCCTTCTAGTTCTACATCAAAGTCTGAAAGCACTC ATTCTCCCAGACCAACAGTTGATGCCTACTCATTGATCCTATTAGAAACGCTACCATCATCAAAGCATGCCAATGTAGATGGAAATAAAGATCGTGCTAA GAATAGTAAGCTTCACACCTCGATACATGAACGTTTGAGCCCTGATAAGAGAGAAGATACAACAAATGTCTGCGGCAGCTCCACTTCAGGAAAAGCTGTG ATGTCTAGGCATCATCTGAATGGCGAAATTCCAATTTGTTCGAACACAATGCAGGTTACCATTCCAGCAGAAGACAGTAATCATGAAGTAGCTGATGCGG ACCCCAGAAGGAACAACGTTGATTTTATGTTCAAAAACTCTGTTGGAATTTGTGAAACAGAAAAGGAAAGCTCTAGACATGAGCAAACCAAAGAGTCAAC AGCTCGTGCAAAATCTATGGTTTCTGGACAATCGACTGATGCATGTGCTAGTAAGAAAGGTCACGCTAGTGGGCAAGATGCCTTGGAAGGAGATGATGGC AGCTTGGTTTCTTCTGAAAGTGCTGAGATTCTGGTTAAGAATAATAATCTTCGAGGTTCTCGACATGATGGTTCAAATGGTCTGCGTCGTAGAAAACCTC GAAAGATCAGATTACTATCTGACTTGTTGAGTGAAGGAAATGGAGTTGGAAATGCTAATGCCCCTAAAAAGACTGCAGATTTACCCTCCGGTGTCAGCAT TCCCGATGCATCTGCAACAATTGATAAGCCCCCTGGCTCCCCGAGTCGAGTGGTTACCGAAGGAAGTGATAGAAGAAGTTTGCTTCCGAATAAGAAAAGA AAAGTTCCTCAGGATGAGGAGTGGAGCACCCCTGACATGAGTGCTCATAGTAGAGTGAGCAAAGAAGCCAGGACTTCAAAGAAAGCTGTTGATATCACCA AAATAAATAATGTAGCTGGCCCTTGTGATGTAGTTACGCAAGTGAAAGACAAAATGGCATTACAAAGTAGCACAATAAGCAATTCTAGCAAGATAAGAAG TGAAAACAGTGCTGGCAAAGGGAAGAAGATTGTCAATACCGAGTCTGCTGTGACATCTGAATTAGCGGCAGCAGGTGTGAAATGCAAAAGTAGTACAAAG AACAACTCTAAGAAGACGAGAGGTGATAATAATGCTGCCGTGGGTAAGAAGAAAGATAAAAGTATATTTGTTGCTGATGAGCATCTATCTCTGGCACCAC CATCTTCGCTAAATTTGGCGACAGTAACTGCTTCCAGTATTGGAGATGCTTGTAAGGCAAATACCACAGATCATGCTGTACCAAAATCCTTGAAGAATAA ACATGCACGTAAAGAGATAGATCTTTTCCCGCTGCCTACTCAAAAAGTTGATGAAATATCTATTTCTCCTACGAGGCAATTCAAGTCGGGTCAAGTTGGT GACTTACAAGGTCCTCACCTTCCATCAAATCTGGGAATGCTTGGAGAGGATCTATCAACACGAGAAGCTGGGACAAGGATACCAACTTGGCGTGTTAGTG GTCCAACTAACCCACTGGAAGATTTATCCAATGAAAGAGAGCTAAGTCTTTCTCTTCACATTCACCCAGCTGCACAGAAATCGGAAAGGCCATTTAACAG TGTGAAGGACAAGCAAGGTGGAACATCTAAAGACCAGGTTATGAGTGAAAATGGACAGGAACAATATCTTGGAAGACTTTCTTCGACTCATAGATCTCCA ATGCTTGCACCTTATGGTGGAGTACAAAGTGATTCGAGTAGGAAGCAACCCATCATTGGACTTCCCTTCCTCAGCGGGACAAAGAACCATAACTCACCAA CTGACATGGGAGGTTCTCTTATCCATAAAAAGAACTTTGGCAGTACAAACATCCATGATAACCCCACTGGATTTCAGAAACAAATAGCTGCTAAAGTGAA GGATGTTGACCAGAGAGGTGTCAGGATATCTGAACAGGAAGCTTCAGATGACATCCCAATGGAAATTGTTGAACTAATGGCGAAGAATCAGTACGAGAGG TGTCTTCCTGATGTTCAAGCTGAGAGGTACCGCCCAGAAGCAACTAGCAGGTCCAGCAAGGGTCAGACAATGGAATTTGGCAATGTCTATGGACATTTGA ACATGCACCCATATTATCAGGAAGCTTACAATGAAAGGCGACAGACTAACAATGGACGAAATGGCATAATCCATTGGGGCGAGAATGCGAGACTCGCCAA ACAGAAGTCAGTTGCTAAGTTCCCTCAAGTGGATCAAAACAGATTCTTCATATACCAACCAGATCAAAGTCGTTCCCATGGTAGCTACGCGGAATTCCTG CCCCGTCAGAAGCCATCTAGTATGGCAAATTCTGCTTCTTCCTCCAGTGGGGAAATTGGTGATCAAAGTTGGAGATTGTTTGGAGATGTATCTATGAAGA GGCAACCTCAAACTAGTTCACACCCCACAGGGCCATGGAACGTATGTCACAACATTCCACAGCAGCAGCATAAAGATGCATATCACTTATGGCGAAATTC AGTACCCAGTCACAACTTGCCTTTCATTTATAACGTTCCCCAGAAGAATGCATCACTGACTACCCATATGGATGGTATATTGCCTTGTTCAGCAAGCATA CCGAAGGCGAGTATCAACCGGGATAGTGACCTCATCAATTATCCAAACCGGAACGTTTCAAGACTTCACAAAGAAAGTAATAGTCTTGATTCTGAGATGC CAAGCAAGGAACGTTCGGAGAACCAACTTACTTGCAATCATCATAATGTTGTAGAGCTTAACCAGCAGCCGACAGGAAACTTAGATATCCCTTCGGATGA AAACATGTCAGCTATGCAACTGCTCACCCTCATGAATGCAGGATTAAGCTCCAATAATAGACAAGTGAACCAAGATGTGGAACCTAAGTTGCCCATAAGA CCTTCCACTTCTCTCGAGCAGCAGCAGCATTCAGGGATTGGTTCCACCTCGCACAAGGACAATGGTAAAAAAAGAACTCTGCCATATGGTTATGTCAGCA ACAACCAATTTACTAGGGGTGTCCATACTCCCCCAACATTTGGTTCATCGTTTCAACTTGATCGAGGTTTCAGTAAGGCCATCGATTTCACCAGGCAAGT CCCTCAGTCTACAAGTAGCAGTTTTAAAATCCCTTCAGAGTCTGGTCCCAAGCAGACCATGCTTCTTGGTTCTTCAGATTCATATAGGATTCCCTTCCAA ATTCCATCATCAAGGGTTTGCAAAGAACAAATGCTGGAGGCTTCTATCACCAGCAGAAGTGATCGATCATCAAAACGGAAGTTGGAGCCGGATGTCTGCC TAACGAACAGGAACCCGGCTGATTTTAGTTATCCAGCGCCTGACAACCCTTTCATGATAGGGGCTGAAGACTTGAAGTTCCTAGATGCTGGTGTAGTAAA TCAAAAGCGGCAGAAGAAGAAGGTTGCGCCTGGAAGTAGAGGACGTGTAGCACCGCGTCTGATCAATCCATAA
AA sequence Show only first row Show all	>Lus10011692 pacid=23156311 polypeptide=Lus10011692 locus=Lus10011692.g ID=Lus10011692.BGIv1.0 annot-version=v1.0 MERSNTDTVVEAGKTDAVHKAMDSPIKIKSICIELNASKGNNVAEDCNHFSIRGYVSEIREKDISKSWPFDLPDTHSKDCDEDDRELPPLEERRFRYWRC ESCMQRIGQPVETVKHPAVPLRPSSSTSKSESTHSPRPTVDAYSLILLETLPSSKHANVDGNKDRAKNSKLHTSIHERLSPDKREDTTNVCGSSTSGKAV MSRHHLNGEIPICSNTMQVTIPAEDSNHEVADADPRRNNVDFMFKNSVGICETEKESSRHEQTKESTARAKSMVSGQSTDACASKKGHASGQDALEGDDG SLVSSESAEILVKNNNLRGSRHDGSNGLRRRKPRKIRLLSDLLSEGNGVGNANAPKKTADLPSGVSIPDASATIDKPPGSPSRVVTEGSDRRSLLPNKKR KVPQDEEWSTPDMSAHSRVSKEARTSKKAVDITKINNVAGPCDVVTQVKDKMALQSSTISNSSKIRSENSAGKGKKIVNTESAVTSELAAAGVKCKSSTK NNSKKTRGDNNAAVGKKKDKSIFVADEHLSLAPPSSLNLATVTASSIGDACKANTTDHAVPKSLKNKHARKEIDLFPLPTQKVDEISISPTRQFKSGQVG DLQGPHLPSNLGMLGEDLSTREAGTRIPTWRVSGPTNPLEDLSNERELSLSLHIHPAAQKSERPFNSVKDKQGGTSKDQVMSENGQEQYLGRLSSTHRSP MLAPYGGVQSDSSRKQPIIGLPFLSGTKNHNSPTDMGGSLIHKKNFGSTNIHDNPTGFQKQIAAKVKDVDQRGVRISEQEASDDIPMEIVELMAKNQYER CLPDVQAERYRPEATSRSSKGQTMEFGNVYGHLNMHPYYQEAYNERRQTNNGRNGIIHWGENARLAKQKSVAKFPQVDQNRFFIYQPDQSRSHGSYAEFL PRQKPSSMANSASSSSGEIGDQSWRLFGDVSMKRQPQTSSHPTGPWNVCHNIPQQQHKDAYHLWRNSVPSHNLPFIYNVPQKNASLTTHMDGILPCSASI PKASINRDSDLINYPNRNVSRLHKESNSLDSEMPSKERSENQLTCNHHNVVELNQQPTGNLDIPSDENMSAMQLLTLMNAGLSSNNRQVNQDVEPKLPIR PSTSLEQQQHSGIGSTSHKDNGKKRTLPYGYVSNNQFTRGVHTPPTFGSSFQLDRGFSKAIDFTRQVPQSTSSSFKIPSESGPKQTMLLGSSDSYRIPFQ IPSSRVCKEQMLEASITSRSDRSSKRKLEPDVCLTNRNPADFSYPAPDNPFMIGAEDLKFLDAGVVNQKRQKKKVAPGSRGRVAPRLINP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	0	1
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10009490 [exp]	1.0	0.9601
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	5.7	0.9346
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	6.5	0.8809
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	7.2	0.9119
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	7.5	0.9370
AT5G64270			splicing factor, putative (.1)		Lus10033347 [exp]	8.3	0.9365
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10040386 [exp]	8.4	0.9241
AT4G10320			tRNA synthetase class I (I, L,...		Lus10024041 [exp]	8.5	0.9186
AT5G44150			unknown protein		Lus10018632 [exp]	8.6	0.8653
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10023583 [exp]	9.5	0.9141

Compare expression of checked genes

Lus10011692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.