Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29000 296 / 4e-92 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 290 / 3e-90 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT5G25790 271 / 2e-84 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G16160 139 / 5e-36 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G14770 130 / 1e-31 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22760 128 / 4e-31 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G22780 126 / 3e-30 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 120 / 2e-28 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009494 [exp] 903 / 0 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10043225 [exp] 292 / 6e-91 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10023656 [exp] 263 / 8e-80 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 249 / 2e-74 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002033 [exp] 135 / 6e-33 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002895 [exp] 130 / 3e-31 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10006604 [exp] 112 / 1e-25 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 112 / 2e-25 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G039300 [exp] 338 / 7e-108 AT2G20110 269 / 2e-81 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.006G160400 [exp] 309 / 3e-97 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G083000 [exp] 275 / 3e-86 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.001G184800 [exp] 226 / 7e-67 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.006G251200 [exp] 131 / 8e-32 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.008G156100 [exp] 129 / 3e-31 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.005G051100 [exp] 129 / 5e-31 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.018G030000 [exp] 125 / 1e-29 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.010G083400 [exp] 124 / 2e-29 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.001G173600 [exp] 114 / 4e-26 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [flax] [poplar] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Lus10011693 pacid=23156323 polypeptide=Lus10011693 locus=Lus10011693.g ID=Lus10011693.BGIv1.0 annot-version=v1.0 ATGGAGCAAGGAGAGACCGTTTCAGATTTTGCACCGAAGAAATTAGCGCGGCAACTTGATTTCACTGCTGTTTGTAGAGCGTCAGTCAATGTGGCCGTGC CGGAGCATCACTCTCAGCTGCTTCAGCAAGCATTTCCGCCACCGCCTTCGCCGTCAGCTCGGCAACAACAACAACTACAACAACAACAACAACAACAACA ACAGTCGTTGCTGCCAATGCTACAATTTCATCTGCAGTTACAATCACCGCCGTCAAAGCGGACTCCGAAGCCGCCGCGAGATCAATCTCGAGAACTAGTT GGAGCAGGTGCGGAATTACGTTTACATCTGCAGACACCGCCTCCGCCACTGAATCAGTCCCATTCACAGCCGCTAGCTCAGCCAACCAAGGTAATGCCAC AGTTGCAAGCAAGGTCGCAGCAAATGTCGGCGGTATATCGGATCCCCCACCCTGTTCATAAACTGCCACTGCCTGCACTGCTGCCAGCCAAGCAAGAATC TCCCAGAGCACATCCGAAGGTTGACACCGAAGCAAAAGATGTTACTGTTACCCCTAATAAACCAAAGCAATGCAATTGCAAAAATTCTCGGTGCTTGAAG CTGTATTGTGAATGCTTTGCTGCTGGAATATATTGTGATGGCTGCAACTGTGTCAACTGCCACAATAATTTGGAAAGTGAGAATACTAGGCAAGATGCTA TTGGAATAATCTTGGAGCGTAATCCATATGCGTTTAAACCAAAGATTGCTAGCAGCCCTCAAGGATATAGTGCCAGTGAAAGTCCAGGAGTAGTACGAAT GATTGGAAAGCATAACAAAGGGTGTCACTGTAAGAAATCAGGCTGTCTAAAGAAGTACTGTGAGTGCTTTCAAGCAAACATTTTGTGCTCGGAGAACTGC AGGTGCATGGACTGTAAAAATTTCGAAGGAAGTAAAGAAAGAAAGGCTATCTACTATGGAAATTCTAGTGGCAGTATTTATGTTCAACAAGCTGCAAATG CTGCCATCAATGGAGCCATTGGATCATCAGGCTATGGGATTGCGCCGTCATCAAAAAAAAGAAAGAGTAACACTATGCATGATAATGAGAATAAAGATTC AAGTTTGAGTTTTAGTTTGAAGTTTCAGAAGGAAAATCACGGTAACGGTATCACCTCTGCATTGCCTGAACTGAGACTGCGTACTACCAGTTCACCCCTG TTGGGATCTTCAAATTTGACATACAGGTCCCCATTGGCAGGTATAATTCAACCACAACATGTTAAGGAGATGTGTTCGCTCTTGGTGGTACTTTCAAAAG AAACTGGAAAGGAAATTGCAGCTAGCAAAGGGAAAACGGGTAAACTGCCCAAAGGAGGAAAGGTTGAGAATTCTTCTGCTTCACCCATTTCAGAGAGACA ATACAGTTTGGCGCTCAATGTCAATTGCCTCGATGATAGCTTCAAGGAGACGACAAACGAAAGAGAGAGGAAAACCGATTCCGTGGCAAGCAGAGACAAG TTGGAAAATGGAAGACTGCCCTTTCCTGAGATTGATCTCATGTGCCACGAGCAAGAGTTGGACTTCCCAAAATCCGAGTCACCAACGCTTGAGCCAGCAG TTTGTCGACATGAAACCAAAGAAGCACCATCCAGTAGCCTTGATTTCTCCGAGGTCTATGTGGAGCAGGAAAGGCTAGTCTTGACTGGTTTTAGGGACTT CCTAACTAGAGTCATCACTTGTGGAAGCATAAAAGGTTCTACTTCTGATCTCAGGATCTTCTTCACTCGTCATGCCTGTCCGTCATCCCATGTTTGGTTT TACATCCTGACATGA
AA sequence Show only first row Show all	>Lus10011693 pacid=23156323 polypeptide=Lus10011693 locus=Lus10011693.g ID=Lus10011693.BGIv1.0 annot-version=v1.0 MEQGETVSDFAPKKLARQLDFTAVCRASVNVAVPEHHSQLLQQAFPPPPSPSARQQQQLQQQQQQQQQSLLPMLQFHLQLQSPPSKRTPKPPRDQSRELV GAGAELRLHLQTPPPPLNQSHSQPLAQPTKVMPQLQARSQQMSAVYRIPHPVHKLPLPALLPAKQESPRAHPKVDTEAKDVTVTPNKPKQCNCKNSRCLK LYCECFAAGIYCDGCNCVNCHNNLESENTRQDAIGIILERNPYAFKPKIASSPQGYSASESPGVVRMIGKHNKGCHCKKSGCLKKYCECFQANILCSENC RCMDCKNFEGSKERKAIYYGNSSGSIYVQQAANAAINGAIGSSGYGIAPSSKKRKSNTMHDNENKDSSLSFSLKFQKENHGNGITSALPELRLRTTSSPL LGSSNLTYRSPLAGIIQPQHVKEMCSLLVVLSKETGKEIAASKGKTGKLPKGGKVENSSASPISERQYSLALNVNCLDDSFKETTNERERKTDSVASRDK LENGRLPFPEIDLMCHEQELDFPKSESPTLEPAVCRHETKEAPSSSLDFSEVYVEQERLVLTGFRDFLTRVITCGSIKGSTSDLRIFFTRHACPSSHVWF YILT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10011693 [exp]	0	1
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10009494 [exp]	1.4	0.9347
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10028486 [exp]	2.2	0.8645
AT1G21740			Protein of unknown function (D...		Lus10042722 [exp]	2.4	0.8880
AT1G77500			Protein of unknown function (D...		Lus10042723 [exp]	4.9	0.8678
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10022136 [exp]	5.1	0.9094
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10012940 [exp]	10.9	0.8311
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10012608 [exp]	16.2	0.8516
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	20.2	0.8464
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10007854 [exp]	24.8	0.8325
AT5G14610			DEAD box RNA helicase family p...		Lus10032135 [exp]	25.4	0.8285

Compare expression of checked genes

Lus10011693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.