Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25770 486 / 9e-172 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009496 [exp] 147 / 8e-43 AT5G25770 108 / 7e-30 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10009497 [exp] 77 / 2e-17 AT5G25770 64 / 2e-13 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240600 [exp] 559 / 0 AT5G25770 497 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10011694 pacid=23156332 polypeptide=Lus10011694 locus=Lus10011694.g ID=Lus10011694.BGIv1.0 annot-version=v1.0 ATGGGAATTTCCCTTTTCCCAGCCGCCCCCACGGTTACTTCTCCACCGCTGTCTCTCTACAAACTAGTACCCGCAGTATCAGCACCTTCCGGCTCTCCGC GACCTCGAAAGCGATTCCCATCCTACTCCACACGTGTGGCCCACTCCCCCTCACACGTGTCAGCGATCGTTCATCATCTTCCTCCTCCCCCGCCAAAGCT TCTCTCCTTTAAATTCCCCGCAACTCCCCCTCCTCCTAGTCACTTGCTCCTCTGCTCTAGTCCAATGGCCGTCACGGAAGAGAAGGCAACTCCCTTCTAT CTTGCTCCCGCTCCCGCTGCTAAACTCACGGACAATGAATTAGCTCCTAGTCTCCGCTCCGATTTCATCCGCCTTCTTCACACCAGGCGCACCGCACTAG TTCCATTGGTTGTGGAGAAGGCGAAACCGGTGACGCATCCGTTGTTCCAAGACCCAAACCCGCCAGCCTTCAGCGAGGTTATGGCATCGTGTCCTAAGGC AGATATTCCAAATTTTAAAGACCTACTCAAGGAAGAGAATCTTTACCTGATCACCGAGGGAGGGGAGCAAGGGCGTATGCCAGTTCTAACCCTGAGTTTG AAAGGAGGTGAGGCACAAAGGAGCCCTGCTGTTGTGTTTCTGCACAGCACAAATAAGAACAAGGAGTGGTTGCGTCCTTTGTTAGAGGCCTATGCTTCGA GGGGATACGTTGCAATAGCCATTGATTCTCGCTACCACGGTGAACGAGCTCCCACCAAAACCACCTACAGAGACGCTCTTGTGGCATCATGGAAGAGAGG TGACACAATGCCCTTCATATTTGATACCGCATGGGACTTGATCAAACTTGCAGATTATCTCACACAAAGGGAGGATATAGACAGTACCAGGATTGGAATC ACTGGTGAATCGCTTGGAGGGATGCATGCTTGGTTTGGTGCTTTTGCGGACAAGCGATACTCAGTGGTTGCCCCGATAATTGGTGTCCAGGGATTCCGAT GGGCACTAGACAACGACAAATGGCAGGCTCGTGTCGATAGTATAAGAGCAGTATTTGAAGAAGCGAGGATAGATTTGGGGAAGAAGGCTATTGATGAAGA ACTAGTGGAGAAGGTCTGGAATAGGATCGCTCCTGGCCTAGCGTCGAGCTTTGATTCCCCTTACACCGTTCCAGCTATTTCACCCCGTCCTCTGCTTATT CTCAATGGCGCAGAAGACCCTCGTTGCCCAACCGGCGGTTTGGATATTCCAACCTCTAGAGCACACAAGGCCTATGCGGAAGCCAATGCCTCAGACAAGT TCAAGGTAATTACAGAAGCTGCAATTGGGCACCAAATGACGAACTCCATGGTGAAAGCAGCAAGCGATTGGTTCGACAAATACCTCAAACAGTGA
AA sequence Show only first row Show all	>Lus10011694 pacid=23156332 polypeptide=Lus10011694 locus=Lus10011694.g ID=Lus10011694.BGIv1.0 annot-version=v1.0 MGISLFPAAPTVTSPPLSLYKLVPAVSAPSGSPRPRKRFPSYSTRVAHSPSHVSAIVHHLPPPPPKLLSFKFPATPPPPSHLLLCSSPMAVTEEKATPFY LAPAPAAKLTDNELAPSLRSDFIRLLHTRRTALVPLVVEKAKPVTHPLFQDPNPPAFSEVMASCPKADIPNFKDLLKEENLYLITEGGEQGRMPVLTLSL KGGEAQRSPAVVFLHSTNKNKEWLRPLLEAYASRGYVAIAIDSRYHGERAPTKTTYRDALVASWKRGDTMPFIFDTAWDLIKLADYLTQREDIDSTRIGI TGESLGGMHAWFGAFADKRYSVVAPIIGVQGFRWALDNDKWQARVDSIRAVFEEARIDLGKKAIDEELVEKVWNRIAPGLASSFDSPYTVPAISPRPLLI LNGAEDPRCPTGGLDIPTSRAHKAYAEANASDKFKVITEAAIGHQMTNSMVKAASDWFDKYLKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25770			alpha/beta-Hydrolases superfam...		Lus10011694 [exp]	0	1
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10010521 [exp]	5.3	0.8331
AT3G50000		ATCKA2, CKA2	"casein kinase II, alpha chain...		Lus10011534 [exp]	7.5	0.8352
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	8.3	0.8282
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001842 [exp]	10.1	0.7376
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	11.3	0.8022
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10001724 [exp]	13.3	0.7549
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10002849 [exp]	14.1	0.7644
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10009593 [exp]	25.6	0.8172
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	29.9	0.7795
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10011254 [exp]	31.2	0.7855

Compare expression of checked genes

Lus10011694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.