Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25760 252 / 1e-83 PEX4, UBC21 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) AT1G16890 105 / 1e-27 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT1G78870 106 / 2e-27 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT5G50870 105 / 1e-26 UBC27 ubiquitin-conjugating enzyme 27 (.1.2) AT5G62540 102 / 4e-26 UBC3 ubiquitin-conjugating enzyme 3 (.1) AT1G64230 102 / 8e-26 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT1G14400 101 / 1e-25 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT2G02760 101 / 1e-25 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT2G16740 99 / 9e-25 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT4G27960 100 / 1e-24 UBC9 ubiquitin conjugating enzyme 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009495 [exp] 263 / 3e-86 AT5G25760 273 / 1e-93 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Lus10017654 [exp] 108 / 2e-28 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10033611 [exp] 108 / 2e-28 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000353 [exp] 111 / 3e-26 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10008766 [exp] 105 / 6e-26 AT5G50870 326 / 1e-114 ubiquitin-conjugating enzyme 27 (.1.2) Lus10022248 [exp] 105 / 6e-26 AT5G50870 325 / 4e-114 ubiquitin-conjugating enzyme 27 (.1.2) Lus10036727 [exp] 102 / 8e-26 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10037203 [exp] 102 / 8e-26 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10042979 [exp] 109 / 1e-25 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240900 [exp] 255 / 5e-85 AT5G25760 315 / 2e-112 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Potri.018G039200 [exp] 252 / 9e-84 AT5G25760 314 / 5e-112 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Potri.011G111400 [exp] 106 / 2e-27 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.001G392500 [exp] 106 / 2e-27 AT1G78870 310 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.008G134400 [exp] 103 / 9e-27 AT3G08690 159 / 4e-51 ubiquitin-conjugating enzyme 11 (.1.2) Potri.015G103400 [exp] 104 / 3e-26 AT5G50870 338 / 4e-120 ubiquitin-conjugating enzyme 27 (.1.2) Potri.012G104100 [exp] 103 / 6e-26 AT5G50870 334 / 1e-118 ubiquitin-conjugating enzyme 27 (.1.2) Potri.015G064000 [exp] 100 / 2e-25 AT2G02760 284 / 3e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.019G039200 [exp] 100 / 2e-25 AT2G02760 285 / 2e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.013G064400 [exp] 100 / 2e-25 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10011695 pacid=23156318 polypeptide=Lus10011695 locus=Lus10011695.g ID=Lus10011695.BGIv1.0 annot-version=v1.0 ATGGGTACCACTTTTCGAAAAGAGTATTTCCACCCTACAAGCCTTGGGTATCAGGAAATCCCTTTCGAGGATAAGACCGTCTCCACTCAATTTCCCTATG TTGTCACAGAGCTAATCGAATTCTCTCTGTTGTGTGGGCTTCCAGATTTCGTCGGCAAGCTCATCAAACTGGGGAAACCAAATCATGTTCAGAGCAAGAA TTTGGTGTCGCTGATAAAGACCCTCACCGTATCTGACGAGAGTGTCATCGACCCTGACACTGCTATTCTTGATGATGCTTCTAACCTAGTGATTGTTGGG TTCTTGGCCTTCCGGATTGGCATGTTTGAAGGGAGGCATGCTGCCTATAGTGGTGCAGGCAGTCGAATTTTCCTTGACTTCCAACACCCTTTGGCATACT CCCTAAGGGTCGTGTCATCAACACCTCTTAGAACCGTCAAGCTCGAACACCTCGCTGAAAACACACCTGACGGAACTGCTACTGAGGCTCTGCAAGTTCC TTCTGCACAAAAACTTTTTGGGATCGAACAGTGGCGTGCCAATGTTGGTGACCTAGAATGTGGTGAGAAGCCTGGGTCGATTGTTTTGCGACTGTTGACC TTTTGGTGCGAAAAGAAGATCGGTGATAGGAAGACAGTTCATTATACTCAAAGGCTATGGCTGGATATAGAGGCTTCCAGGGCAAGGCTGTTCAAGGAGT ACAAAGAGGTGCAGAGAGAGAAAGTTGTTGATCCAGATATCCAGTTGGTTTGTGATGATTCCAACATTTTCAAATGGACTGCACTTATCAAGGTGAGTTT GGTTCGGAGGGATGGAGAAGACTGCTGTTGTTATATGTCTATTAATCTCAGCCATGAGTTTTCGGTACAGGGGCCTTCAGAGACTCCATTTGAAGGTGGA GTCTTCCAGCTTGCCTTTTCTGTGCCTGAGCAGTATCCCTTGCAACCTCCACAAGTCCGGTTCTTGACCAAAATATTCCACCCGAATGTGCATTTCAAGA CAGGGGAGATATGTCTGGACATCTTAAAGAATGCATGGAGTCCTGCATGGACTCTTCAGTCAGTTTGTAGGGCTATAATTGCTCTTATGGCCCATCCTGA GCCTGATAGCCCTCTCAACTGTGATTCAGGCAAGCTAAATATCATTGTCTAA
AA sequence Show only first row Show all	>Lus10011695 pacid=23156318 polypeptide=Lus10011695 locus=Lus10011695.g ID=Lus10011695.BGIv1.0 annot-version=v1.0 MGTTFRKEYFHPTSLGYQEIPFEDKTVSTQFPYVVTELIEFSLLCGLPDFVGKLIKLGKPNHVQSKNLVSLIKTLTVSDESVIDPDTAILDDASNLVIVG FLAFRIGMFEGRHAAYSGAGSRIFLDFQHPLAYSLRVVSSTPLRTVKLEHLAENTPDGTATEALQVPSAQKLFGIEQWRANVGDLECGEKPGSIVLRLLT FWCEKKIGDRKTVHYTQRLWLDIEASRARLFKEYKEVQREKVVDPDIQLVCDDSNIFKWTALIKVSLVRRDGEDCCCYMSINLSHEFSVQGPSETPFEGG VFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGKLNIIV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Lus10011695 [exp]	0	1
AT5G23395		MIA40	mitochondrial intermembrane sp...		Lus10001795 [exp]	4.9	0.7721
AT3G42150			unknown protein		Lus10011614 [exp]	4.9	0.7519
AT3G62920			unknown protein		Lus10005942 [exp]	4.9	0.7622
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030583 [exp]	5.6	0.8178
AT3G02950		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10012882 [exp]	7.3	0.7472
AT2G39960			Microsomal signal peptidase 25...		Lus10014838 [exp]	8.9	0.7564
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10023833 [exp]	11.1	0.7660
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Lus10029234 [exp]	11.2	0.7249
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10035287 [exp]	17.3	0.7358
AT2G43780			unknown protein		Lus10035718 [exp]	18.3	0.7479

Compare expression of checked genes

Lus10011695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.