Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14930 235 / 1e-70 GENE101, SAG101 senescence-associated gene 101 (.1.2.3) AT3G52430 139 / 3e-35 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) AT3G48090 79 / 3e-15 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48080 73 / 2e-13 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009502 [exp] 859 / 0 AT5G14930 299 / 5e-94 senescence-associated gene 101 (.1.2.3) Lus10039444 [exp] 535 / 1e-175 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10014518 [exp] 407 / 1e-135 AT5G14930 298 / 2e-93 senescence-associated gene 101 (.1.2.3) Lus10032169 [exp] 393 / 3e-130 AT5G14930 314 / 7e-100 senescence-associated gene 101 (.1.2.3) Lus10039472 [exp] 375 / 3e-125 AT5G14930 223 / 1e-66 senescence-associated gene 101 (.1.2.3) Lus10004841 [exp] 235 / 1e-75 AT5G14930 99 / 4e-25 senescence-associated gene 101 (.1.2.3) Lus10039617 [exp] 145 / 5e-37 AT3G52430 375 / 1e-122 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10029534 [exp] 140 / 5e-35 AT3G52430 349 / 2e-112 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10042937 [exp] 71 / 8e-13 AT3G48090 416 / 2e-138 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G290600 [exp] 400 / 2e-133 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.009G086100 [exp] 399 / 6e-133 AT5G14930 309 / 4e-98 senescence-associated gene 101 (.1.2.3) Potri.019G005256 [exp] 384 / 4e-127 AT5G14930 317 / 3e-101 senescence-associated gene 101 (.1.2.3) Potri.019G007227 [exp] 376 / 6e-124 AT5G14930 300 / 3e-94 senescence-associated gene 101 (.1.2.3) Potri.007G100600 [exp] 141 / 9e-36 AT3G52430 320 / 4e-102 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G068700 [exp] 138 / 1e-34 AT3G52430 327 / 2e-104 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G291033 [exp] 117 / 2e-30 AT5G14930 84 / 4e-19 senescence-associated gene 101 (.1.2.3) Potri.015G069600 [exp] 103 / 5e-23 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G291166 [exp] 88 / 4e-21 AT5G14930 55 / 3e-10 senescence-associated gene 101 (.1.2.3) Potri.012G074700 [exp] 94 / 6e-20 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10011697 pacid=23156331 polypeptide=Lus10011697 locus=Lus10011697.g ID=Lus10011697.BGIv1.0 annot-version=v1.0 ATGTATCTTACAGTTCATTATCGGTTTAAAGGTTTTAATCCTTGGACGACTGAAATTAAGAAAACAAGAGTTTGGGTTACGTTGCCGGATCTTCCTATTG AATTCTATAATCAGAAGGTTCTTCGAGCCGAGTGCAAAATTGGTAAACCCATCCCGATTGACTGGGCTACAAAGCTTCTTGTTCCGAGGGACGGCGAAAC AGTTCTGGAATCCCCAGTGATAGTGACTGGACATTCCCTTGGTGGGTCGATAGCTTCACTGTTTACACTATGGCTGTTGGACAGCCTAAGTCAACTGCCA TCTAAAAAACCATCAAAGAAGCTCCCAATCTTCTGCATAACATTTGGGTCACCTCTCATTGGAGACAAAGGCGTCTATGGTGGCATTTCTCAGCGCTCCA CGTGGAACTCTTACTTCCTACATGTTGTCTCAAGCCAAGACCCTCTCCCAACCCTCTTTTTAGCCTCATCACCACCACTACTTCGCAACCCTCAGCAGCA TTACCACTACAAGCCATTTGGCACATTTCTGCTCACTTCTGAGCTGGGATGTGCCTGCGTTGAGGACCCAGATGTGGTTTCATTACTCTTGTCCCATAAA GCAGTGGAATTTGAGGAGGAACCTTCCAATTTGGTTCCTATTTCTGTTCAACATTATGGGTTCATGGTGGAACATCTCAAGATTAGAGCTTTGTGCCAGG GAAGCTCACAACTTGGTAGACCAATTGAAGATTCACTCCAGGGTGGGACTGTATTATTGCTTGAAGCGATTGGGATTACTCGCGACCAGCAGGTGCAGCA ACTGCAGAACATGGTGAACCTGGCCGAAAAGACCCAAGGGAGGTTGTTGTTGTCAATGCGGAACAAAAAGAATGCAATGGAACCGAGCAGGAAATTGAAT GAGATAAAGATAAAAGTGGTGCTGCTAGGCAGATACAAACAAGAATGCAGGAAAAAGGGAGTAGGTTACTACGACAGTTACAAGAACCAATGGACCACAG CCGACATAGACATAGCAAGGCACAAGAAACACCTGACCAACTACTGGAAACAAATGGTGGAAGAAGCCGAGAAGAAGCCTCAAAAGGAAGGCTCCCACGT CCGGGTTTCGTGGCTATATGGAGGAACTACTTACAGAAGAATGGTGGAGCCACTCGACATTGCTGACTTCTACAGAGGGGGGAATGGGAACAAAAGGGAT TACAAGAATCAAGGAAGATCTAAGCATTACATCTTGCTAGAGAAGTGGCTGCAGGAAGACAATAGTGCTGCTGATAAGCTGGGAAGCAGCAGCAGCATGA AGAACAATAAGAAGAATCGGGTCGCTGACTTTACAGAGGATTCCTGCTTCTGGGCTAATGTGGAAGAGGCAAGGATATCGTGCAGGTTGTTGAAGGTTCC GACAACAAGTGAAGGAGAAAAGAGAGCATCTGAGGGTTATTTGTTATGGTTTGAAGATTATGTGATGGAACTGATCAGGAATAATGCTGCAGACCCTGAG ATATTTCTGGGAAAGAGCAGCTTCATGAAGTGGTGGGGAGAATTTCAGGAGATTGTGGGGAATAATCATAGTTCCTCGCTCGCCGGATTCATGAGGAGCG GCATCTACCGTCGCTATGGTTCTGAACAGGATAGCTAA
AA sequence Show only first row Show all	>Lus10011697 pacid=23156331 polypeptide=Lus10011697 locus=Lus10011697.g ID=Lus10011697.BGIv1.0 annot-version=v1.0 MYLTVHYRFKGFNPWTTEIKKTRVWVTLPDLPIEFYNQKVLRAECKIGKPIPIDWATKLLVPRDGETVLESPVIVTGHSLGGSIASLFTLWLLDSLSQLP SKKPSKKLPIFCITFGSPLIGDKGVYGGISQRSTWNSYFLHVVSSQDPLPTLFLASSPPLLRNPQQHYHYKPFGTFLLTSELGCACVEDPDVVSLLLSHK AVEFEEEPSNLVPISVQHYGFMVEHLKIRALCQGSSQLGRPIEDSLQGGTVLLLEAIGITRDQQVQQLQNMVNLAEKTQGRLLLSMRNKKNAMEPSRKLN EIKIKVVLLGRYKQECRKKGVGYYDSYKNQWTTADIDIARHKKHLTNYWKQMVEEAEKKPQKEGSHVRVSWLYGGTTYRRMVEPLDIADFYRGGNGNKRD YKNQGRSKHYILLEKWLQEDNSAADKLGSSSSMKNNKKNRVADFTEDSCFWANVEEARISCRLLKVPTTSEGEKRASEGYLLWFEDYVMELIRNNAADPE IFLGKSSFMKWWGEFQEIVGNNHSSSLAGFMRSGIYRRYGSEQDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10011697 [exp]	0	1
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10036870 [exp]	3.0	0.8837
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10012110 [exp]	3.2	0.8548
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10025435 [exp]	4.2	0.8782
AT2G43190			ribonuclease P family protein ...		Lus10026483 [exp]	8.1	0.8706
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Lus10017223 [exp]	10.0	0.8414
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10025794 [exp]	11.4	0.7926
AT1G75440		UBC16	ubiquitin-conjugating enzyme 1...		Lus10041791 [exp]	11.5	0.8405
AT3G18215			Protein of unknown function, D...		Lus10009640 [exp]	13.6	0.8704
AT1G55200			Protein kinase protein with ad...		Lus10041608 [exp]	16.5	0.8677
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	16.9	0.8765

Compare expression of checked genes

Lus10011697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.