Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26490 241 / 2e-74 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 240 / 7e-74 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 233 / 4e-71 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 226 / 1e-68 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 224 / 3e-67 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 207 / 1e-62 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 191 / 1e-55 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 177 / 3e-50 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 176 / 3e-50 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 159 / 9e-44 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009510 [exp] 772 / 0 AT3G50390 245 / 1e-75 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 236 / 1e-72 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 235 / 3e-72 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 226 / 8e-69 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 224 / 3e-68 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012036 [exp] 205 / 3e-60 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 201 / 4e-59 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 196 / 2e-57 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023836 [exp] 192 / 7e-55 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G239600 [exp] 537 / 0 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 248 / 3e-77 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 245 / 9e-76 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 238 / 8e-73 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 237 / 2e-72 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 231 / 1e-70 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 226 / 1e-67 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G051100 [exp] 216 / 1e-64 AT2G26490 223 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 207 / 5e-62 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 205 / 2e-61 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10011699 pacid=23156338 polypeptide=Lus10011699 locus=Lus10011699.g ID=Lus10011699.BGIv1.0 annot-version=v1.0 ATGACGCCATCCCCTACTCCGGCCACCGGCCAAGAAGTTCACTTTATTACCTCTCCCCGCTTATCTACGGACAGCAACTACCGTCACCTGTCCATGATGC CGCCGCCGCCAAGCCCAGGATCTCCGTGGTCCTTCTCCCCTCCAAGGGCGAGTCCCTCGCCGTCCCTACTACATCACTGTATAGCCTCCCTCCACCGCCA CGAGGGGAATATATACACCATCGCCGTCGCCAAAGGCGTGGTGTTCACCGGCTCGGAGAGTAGCCGCATCCGCGCGTGGCGACACTCGGACTGCACGGAG CGTGGGTACGTCAAGGCTAGCTGCGGTGAGGTGCGAGCCGTGCTGGCGTACGGAAACGCGCTATTCTCGGCACACAAGGACCACAAGATAAGGATTTGGA ACTTCACCCTCTCCGATACCTTCCGCTTCAAGAAAATCTCCACTTTGCCCCACAAACGCTCCCACATTTTCCCCTTCCTCAGGAACAGCAACAGTATGAT TGCACCGCGGCAGCAACAGCACAAGGAGTGCGTATCGTGCATGGCGTACTACCACACAGAGGGACTCCTCTACACAGGGTCCCACGACAGAACCGTGAAG GTGTGGCGAGTCAATGACGAGAAGAAGCCGTGCGTTGACTCGTTCCAAGCCCACGACGAGAGCATCACCTCTATAATTGTGAACCAGAACGACGGATGCG TGTTCACGGCCTCTTTCGACGGATCCATCAAGATATGGCGACGTGTCTACCGAGAAAACTCGCACACACTCACCATGACCCTTAGGTTCCAACAATCGCC AGTCAACGCCCTGGCGTTGACCATGACCAGCTCACTCTCCTCCTCCGGCTCCGGCTGCTGCTTTCTGTACTCGGGTTCCTCGGACGGGACCATCAACTTC TGGGAGAAGGAGAAGTTCTCCGGTAGGTTTAACCATGGCGGGTTCTTGCAAGGCCACCGTTTCGCAGTGCTGTGCCTGGCCGCGGTGGAGGAGGCAAAGT TGGTGTTCAGTGGGTCGGAGGATACAACCATTAGGGTTTGGAGGAGGGAAGGACCTGGTAGCGGCGGATTCCATGAGTGTTTGGCTGTTTTGGATGGGCA TAGAGGTCCCATTAAGTGTTTGGCGGTTAGTTTGGAGATGGAGAAAGTTGGGAATGCGTTTTTGGTGTATAGTGCTGGTTTGGACCAGAGTTTTAAGGTG TGGAGGGTTAAGGTTTTGATGGAGGATCAGGAGGAGGAAGGATCAGGCGGTGATTCTAATAAGGAAGAGATTGTCAAGGCAATCAGGAGGGGTATTAGCA CTAATAATCTTGATCCCATTTCGACGGATAGTATTGATAATAAGGTGAGTAATAAGGTGTTGGAGTACGAGACCAGTCCTGTTCTGTCTCCTTCCTGGGT TGAGAAGAAGCTCAGAAAAGATAAATTTTTGTAG
AA sequence Show only first row Show all	>Lus10011699 pacid=23156338 polypeptide=Lus10011699 locus=Lus10011699.g ID=Lus10011699.BGIv1.0 annot-version=v1.0 MTPSPTPATGQEVHFITSPRLSTDSNYRHLSMMPPPPSPGSPWSFSPPRASPSPSLLHHCIASLHRHEGNIYTIAVAKGVVFTGSESSRIRAWRHSDCTE RGYVKASCGEVRAVLAYGNALFSAHKDHKIRIWNFTLSDTFRFKKISTLPHKRSHIFPFLRNSNSMIAPRQQQHKECVSCMAYYHTEGLLYTGSHDRTVK VWRVNDEKKPCVDSFQAHDESITSIIVNQNDGCVFTASFDGSIKIWRRVYRENSHTLTMTLRFQQSPVNALALTMTSSLSSSGSGCCFLYSGSSDGTINF WEKEKFSGRFNHGGFLQGHRFAVLCLAAVEEAKLVFSGSEDTTIRVWRREGPGSGGFHECLAVLDGHRGPIKCLAVSLEMEKVGNAFLVYSAGLDQSFKV WRVKVLMEDQEEEGSGGDSNKEEIVKAIRRGISTNNLDPISTDSIDNKVSNKVLEYETSPVLSPSWVEKKLRKDKFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50390			Transducin/WD40 repeat-like su...		Lus10011699 [exp]	0	1
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	2.4	0.9322
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10007650 [exp]	3.2	0.9308
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	4.9	0.9297
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10034679 [exp]	5.5	0.9190
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Lus10032984 [exp]	6.0	0.9055
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	7.0	0.9049
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10020059 [exp]	7.7	0.9233
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	8.8	0.8946
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Lus10038512 [exp]	10.2	0.8404
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10018360 [exp]	11.0	0.9016

Compare expression of checked genes

Lus10011699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.