Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22870 422 / 4e-150 EMB2001 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G11480 276 / 3e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G58370 107 / 3e-26 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G12080 47 / 1e-05 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2) AT1G08410 44 / 0.0001 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27200 44 / 0.0001 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039653 [exp] 544 / 0 AT2G22870 426 / 2e-151 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022126 [exp] 284 / 3e-95 AT5G11480 418 / 8e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011673 [exp] 283 / 5e-95 AT5G11480 418 / 1e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009919 [exp] 103 / 7e-25 AT5G58370 473 / 9e-165 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10028574 [exp] 44 / 0.0001 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10014289 [exp] 44 / 0.0001 AT5G66470 587 / 0.0 RNA binding;GTP binding (.1) Lus10018881 [exp] 44 / 0.0001 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10004103 [exp] 43 / 0.0002 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023835 [exp] 43 / 0.0003 AT1G52980 708 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G006300 [exp] 432 / 9e-154 AT2G22870 434 / 2e-154 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G243200 [exp] 302 / 2e-102 AT5G11480 422 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G037000 [exp] 291 / 4e-98 AT5G11480 421 / 7e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G006501 [exp] 202 / 5e-66 AT2G22870 199 / 2e-65 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G007450 [exp] 132 / 3e-39 AT2G22870 131 / 3e-39 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G128000 [exp] 97 / 3e-22 AT5G58370 461 / 1e-158 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G017000 [exp] 42 / 0.0004 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G021900 [exp] 41 / 0.0008 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10011703 pacid=23145630 polypeptide=Lus10011703 locus=Lus10011703.g ID=Lus10011703.BGIv1.0 annot-version=v1.0 ATGCTTCTCCGGTACTGCCGTGTGCCAACCTTCCCACTCATTACGCCTCCGGCGAATCGGAAGTTTCTCCCTCTGAGCACCCATTTCATATTCTCCATTG GAAGATCTGCTTCCTCTATCTCGCCGAGTCATGTGTCGGCTTCAAAGGCGGCAAAGCCGTTGGTGTCGGACCCAGCGAGGTCTGTTCGGACAGTTCTCTT CGTTCCTCCGGGGATTGAGCTAGAGGAGGTGAGGGAGGACATGATTTTATCCGGTTCGAACATCGTAGTCGGACCATACGGGGGTCATTCGCAGATAAAG GAAGTGGAGTTCGTGAAGAGCAGTGCGCGGGCAAAGGATTGCCCCAAAGATGATAAACCTGAGTTCGCCATTCTAGGGAGGTCTAATGTTGGAAAGTCTT CGCTAATCAATTCTTTGGTTCGGAAGAAAGAAATTGCTCTTACATCTAAAAAGCCAGGGAAGACTCAGTTGATCAATCATTTCTTGGTTAACAAAAGCTG GTACCTTGTTGATTTGCCTGGTTACGGGTTCGCCAAAGCATCAGATGCAGCTAGAATGGATTGGTCTGGATTCACAAAAGGATACTTTCTGAACAGAGAG AGTCTGGTTGGTGTGCTTCTCCTGATTGATGCAAGCGTTCCTCCTCAAAAGATAGACCTGGACTGCGCAAATTGGCTTGGACGAAACAAAATACCATTAA CTTTTGTATTCACCAAGTGTGATAAGGTGAAAGGTGGGAAAGGAATGCGGCCGGAAGAGAACATCAGTAATTTCCAGGAGTTGATAGATGAGAGTTTCCG ACAGCAACAGCCACCTTGGATTATGACTAGTAGTGTCACCGGGCTAGGAAGAGATGAGCTTCTCTTGCATATGTCACAACTCAGAAACTACTGGGATCAG TAA
AA sequence Show only first row Show all	>Lus10011703 pacid=23145630 polypeptide=Lus10011703 locus=Lus10011703.g ID=Lus10011703.BGIv1.0 annot-version=v1.0 MLLRYCRVPTFPLITPPANRKFLPLSTHFIFSIGRSASSISPSHVSASKAAKPLVSDPARSVRTVLFVPPGIELEEVREDMILSGSNIVVGPYGGHSQIK EVEFVKSSARAKDCPKDDKPEFAILGRSNVGKSSLINSLVRKKEIALTSKKPGKTQLINHFLVNKSWYLVDLPGYGFAKASDAARMDWSGFTKGYFLNRE SLVGVLLLIDASVPPQKIDLDCANWLGRNKIPLTFVFTKCDKVKGGKGMRPEENISNFQELIDESFRQQQPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Lus10011703 [exp]	0	1
AT1G02160			Cox19 family protein (CHCH mot...		Lus10032273 [exp]	1.0	0.8210
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10021074 [exp]	6.5	0.6943
AT4G39470			Tetratricopeptide repeat (TPR)...		Lus10035707 [exp]	6.9	0.7207
AT5G17660			tRNA (guanine-N-7) methyltrans...		Lus10015923 [exp]	11.0	0.7037
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Lus10039653 [exp]	18.9	0.7879
					Lus10042733 [exp]	21.7	0.6662
AT2G35450			catalytics;hydrolases (.1)		Lus10037047 [exp]	22.9	0.7841
AT2G30695			unknown protein		Lus10004791 [exp]	34.7	0.6980
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10007648 [exp]	40.6	0.7289
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10036049 [exp]	47.1	0.6569

Compare expression of checked genes

Lus10011703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.