Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37700 45 / 3e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025207 [exp] 186 / 7e-61 AT4G37700 56 / 4e-10 unknown protein Lus10011553 [exp] 75 / 1e-17 ND 49 / 4e-08
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G006300 [exp] 57 / 9e-11 AT1G58420 56 / 3e-10 Uncharacterised conserved protein UCP031279 (.1) Potri.007G006100 [exp] 45 / 3e-06 AT1G58420 68 / 1e-14 Uncharacterised conserved protein UCP031279 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011707 pacid=23145623 polypeptide=Lus10011707 locus=Lus10011707.g ID=Lus10011707.BGIv1.0 annot-version=v1.0 ATGGGGAAAGTACTAATGAAGGGAAATAGAGTGAAGAAGCTCCTGAAACTGCCAATCAGATTCCTTGTCAAAGCCAGGGACTTTTATGTCACTGGAATGT CCCAATTGTCCGACCAGATGAGGTACGACGCCGTTTCCTCCGCGGGTTGTCCCACCCACATCAGAACCATCTCCAGGAGCTTCAGCGTCGGAGCCACCTC CTCCAGGGCGGCTTCTTTAGTCAAGGGAAACAGGATTACTATGCAGGATTCTAGTAAAAAACCTGCAGAAATCAAGGTCCCAAGGAGTCAGAGCGTTGGA CTTGGGAGAATAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGAAATCTGAGTGTCTTTCTGGGGAAATTTCGTTCTGCACAAGTTCTTCTACAA CGGGATTTCCCAGAAGCAAAAGCTGTGTTGTTTCTGGTGGTGGTAGTGTTCTGTGCGGTGGGAGTTCCAGTGATTTTCTGAAGCCAGCAGCAGTGGCCAC GGCTTAA
AA sequence Show only first row Show all	>Lus10011707 pacid=23145623 polypeptide=Lus10011707 locus=Lus10011707.g ID=Lus10011707.BGIv1.0 annot-version=v1.0 MGKVLMKGNRVKKLLKLPIRFLVKARDFYVTGMSQLSDQMRYDAVSSAGCPTHIRTISRSFSVGATSSRAASLVKGNRITMQDSSKKPAEIKVPRSQSVG LGRIEEEEEEEEEEKEKSECLSGEISFCTSSSTTGFPRSKSCVVSGGGSVLCGGSSSDFLKPAAVATA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37700			unknown protein		Lus10011707 [exp]	0	1
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10023461 [exp]	13.7	0.7745
AT1G03290			unknown protein		Lus10028006 [exp]	17.7	0.7321
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	46.0	0.7120
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10023637 [exp]	46.9	0.7553
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10020085 [exp]	75.7	0.7192
AT1G02810			Plant invertase/pectin methyle...		Lus10029866 [exp]	78.0	0.7014
					Lus10023025 [exp]	153.5	0.7070

Compare expression of checked genes

Lus10011707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.