Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33540 223 / 2e-70 SCPL18 serine carboxypeptidase-like 18 (.1) AT1G73300 213 / 2e-66 SCPL2 serine carboxypeptidase-like 2 (.1) AT3G12203 213 / 2e-66 SCPL17 serine carboxypeptidase-like 17 (.1) AT1G73280 209 / 7e-65 SCPL3 serine carboxypeptidase-like 3 (.1) AT5G36180 208 / 2e-64 SCPL1 serine carboxypeptidase-like 1 (.1) AT1G73270 207 / 3e-64 SCPL6 serine carboxypeptidase-like 6 (.1) AT1G73290 207 / 5e-64 SCPL5 serine carboxypeptidase-like 5 (.1) AT1G73310 206 / 1e-63 SCPL4 serine carboxypeptidase-like 4 (.1) AT2G23010 204 / 6e-63 SCPL9 serine carboxypeptidase-like 9 (.1.2) AT3G10450 204 / 7e-63 SCPL7 serine carboxypeptidase-like 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007731 [exp] 216 / 4e-67 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 215 / 2e-63 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1) Lus10010895 [exp] 185 / 1e-55 AT1G73280 444 / 6e-154 serine carboxypeptidase-like 3 (.1) Lus10020206 [exp] 169 / 4e-49 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10007732 [exp] 155 / 2e-44 AT3G12203 423 / 7e-146 serine carboxypeptidase-like 17 (.1) Lus10025859 [exp] 154 / 2e-43 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10012718 [exp] 145 / 3e-41 AT1G73300 384 / 2e-131 serine carboxypeptidase-like 2 (.1) Lus10038240 [exp] 147 / 1e-40 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 145 / 6e-39 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G124900 [exp] 232 / 2e-73 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291300 [exp] 216 / 2e-67 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 214 / 4e-67 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G291700 [exp] 215 / 8e-67 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 214 / 2e-66 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G290900 [exp] 211 / 3e-65 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 199 / 5e-61 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.014G177500 [exp] 164 / 2e-47 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 141 / 7e-39 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.010G220100 [exp] 105 / 7e-26 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10011710 pacid=23145615 polypeptide=Lus10011710 locus=Lus10011710.g ID=Lus10011710.BGIv1.0 annot-version=v1.0 ATGGCAAAGCAACAAGGATTCATCAATAGCAATCTACGAATGGTTTTATTAGTTGTTTTGTTTTTCCAGAATAATGCAACTGCTGCTGGTGAAGGCACCA ATTTCTCCACATTCAAAGTCAAAACTCTGCCTGGTTTCTCTGGCCCACTTCCTTTCAATCTCCAAACTGGTCAGAAAGGAATCCAGATGAAGACAACTCT TTTACTGTGGCTCACCGGTGGACCTGGCTGCTCTGCTCTCTCCGGACTTGTCTTTGAGATAGGTCCCTTGCGCTTTCAACTACTGGAGTACAATGGAACC TTGCCAACCTTGCTTCTCAACCCTCATTCATGGACCAAGGTTGCTAGTATTATTTTCTTGGATGGACCTGTTGGTACTGGATTCTCCTACTCCAGGACTT ACCATGGCTCCATCACCAGTGACACCACTTTCGCCCATCAAGCATCTCGCTTTCTCTCCAAGTGGTTATTGCTGAACCCCAGATTCTTGAAGAACCCATT GTATATTGCTGGAGACTCATATTCCGGCATGGTGGTTCCTCCTATCATTACCCATATATTAACCTCAGCTAATGAAGCTGCTGCAGGGGACAAATGGGAG CCAACACTGAATCTCAAAGGCTATTTGCTTGGTAATCCAGGGACGGATTCGAGATTCGATTTCAATTCCAGAATCAAATTTGCTCATCGCATGGGTCTCA TTTCTGATGAACTTTACAAGTCTGCCAAATGGAATTGTAGAGGAGAGTATGTAAAACTAGACCCCAGCAATATTCAATGCATGCAGGACCTCCAGGCCAT ATCCAAGGCATGA
AA sequence Show only first row Show all	>Lus10011710 pacid=23145615 polypeptide=Lus10011710 locus=Lus10011710.g ID=Lus10011710.BGIv1.0 annot-version=v1.0 MAKQQGFINSNLRMVLLVVLFFQNNATAAGEGTNFSTFKVKTLPGFSGPLPFNLQTGQKGIQMKTTLLLWLTGGPGCSALSGLVFEIGPLRFQLLEYNGT LPTLLLNPHSWTKVASIIFLDGPVGTGFSYSRTYHGSITSDTTFAHQASRFLSKWLLLNPRFLKNPLYIAGDSYSGMVVPPIITHILTSANEAAAGDKWE PTLNLKGYLLGNPGTDSRFDFNSRIKFAHRMGLISDELYKSAKWNCRGEYVKLDPSNIQCMQDLQAISKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Lus10011710 [exp]	0	1
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Lus10003458 [exp]	1.0	0.8402
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10029460 [exp]	4.0	0.8293
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Lus10032674 [exp]	7.7	0.8151
AT1G63320			Pentatricopeptide repeat (PPR)...		Lus10009331 [exp]	8.7	0.7705
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10032524 [exp]	9.8	0.8057
					Lus10032828 [exp]	11.0	0.8057
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10033306 [exp]	12.0	0.8057
					Lus10000273 [exp]	13.0	0.8057
AT4G35620		CYCB2;2	Cyclin B2;2 (.1)		Lus10041092 [exp]	13.6	0.6928
AT1G17930			Aminotransferase-like, plant m...		Lus10001981 [exp]	13.9	0.8057

Compare expression of checked genes

Lus10011710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.