Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37680 585 / 0 HHP4 heptahelical protein 4 (.1.2) AT4G38320 560 / 0 HHP5 heptahelical protein 5 (.1) AT4G30850 238 / 2e-75 HHP2 heptahelical transmembrane protein2 (.1.2) AT2G24150 235 / 3e-74 HHP3 heptahelical protein 3 (.1) AT5G20270 215 / 2e-66 HHP1 heptahelical transmembrane protein1 (.1) AT2G40710 162 / 2e-49 Haemolysin-III related integral membrane protein (.1) AT4G38290 134 / 2e-38 Haemolysin-III related integral membrane protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025206 [exp] 816 / 0 AT4G37680 584 / 0.0 heptahelical protein 4 (.1.2) Lus10010605 [exp] 438 / 3e-153 AT4G37680 464 / 7e-164 heptahelical protein 4 (.1.2) Lus10008057 [exp] 206 / 3e-62 AT5G20270 394 / 6e-137 heptahelical transmembrane protein1 (.1) Lus10038120 [exp] 204 / 4e-62 AT5G20270 377 / 3e-131 heptahelical transmembrane protein1 (.1) Lus10036605 [exp] 150 / 3e-41 AT4G30850 259 / 3e-84 heptahelical transmembrane protein2 (.1.2) Lus10035823 [exp] 95 / 1e-20 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1) Lus10007709 [exp] 43 / 0.0001 ND 47 / 2e-10
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G006000 [exp] 660 / 0 AT4G37680 632 / 0.0 heptahelical protein 4 (.1.2) Potri.007G005800 [exp] 632 / 0 AT4G37680 611 / 0.0 heptahelical protein 4 (.1.2) Potri.T124407 [exp] 288 / 2e-94 AT5G20270 385 / 2e-133 heptahelical transmembrane protein1 (.1) Potri.018G124754 [exp] 287 / 4e-94 AT5G20270 384 / 4e-133 heptahelical transmembrane protein1 (.1) Potri.018G102400 [exp] 263 / 9e-85 AT4G30850 374 / 5e-129 heptahelical transmembrane protein2 (.1.2) Potri.006G064400 [exp] 254 / 2e-81 AT5G20270 369 / 2e-127 heptahelical transmembrane protein1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF03006 [flax] [poplar] HlyIII Haemolysin-III related
Representative CDS sequence Show only first row Show all	>Lus10011713 pacid=23145611 polypeptide=Lus10011713 locus=Lus10011713.g ID=Lus10011713.BGIv1.0 annot-version=v1.0 ATGGATCTGGGCAGTGATGAGCACACTGAATCAGCCGAGAATGACCAATTAGTCTCTTCCGATATCAGATCTGAAATGGCAACGGAAAATCATCAAGATA CCTTTTCCAGAGGGAAAGGACAAAGATTGTGGAAGAAAGTGAAGTACCAGCTTGTGGAGTACCATTCCTTGCCCGCCTATTTAAGGGATAACGAATATAT TCATGGCTATTACAGAGCTGAATGGCCACTTAAGCAGATTCTTCTTAGCATTTTCACCATTCATAACGAAACTTTGAATGTCTGGACGCATTTGATTGGC TTTTTCCTTTTTCTTTCGTTGACCATCTATACAGCAATTAAGGTTCCAAATGTCCACCTTCATTCTATGCATCTGCCAGATGCTCTGAAAGCTGATTTGC ACAAATTGCATTCATGCCTGCCTTCTTTGCCACATATGCCCGATCTTCATAGACTCAGGGATGAGCTAAAGACTACATTGCCTTCGATGGATTTCTCAGG ATGGCATGTTACAGAACTTCTCTACAATTGTTTGCCTGAGCGATTTTCCCATGTCAACCACACTGATGTTTGCCGCTTGCGGAGCATGACAGATGATGTA GGGAATATGATAGCACCACTTATGGTGAGACCTATAACCAGATGGCCGTTTTTCGCCTTCATGGGAGGAGCCATGTTCTGCTTGCTTGCTAGCAGCATAT GTCACCTTTTCTCTTGCCACTCGGAGCGCATGGCATATATAATGCTCCGGGTTGATTATGCTGGAATTGCAGCTCTGATAGCGACCTCCTTCTACCCACC AGTATACTATTCCTTCATGTGCAATCCATTCTTCTGCAACCTCTACTTGGGATTCATAACCCTATTTGGGATTACCACAGTTTTGTTCTCGTTACTCCCA GTTTTCCAAAACCCGGAATGGCGTATAGTTCGTGCATCCCTGTTCTCTTTCATGGGTCTTTCCGGAGCAGCGCCCATATTGCACAAGCTCATATTGTTCT GGCACCAGCCTGAGGCACTCCACACCACTGGGTATGAACTCCTAATGGGATTTTTCTATGGACTTGGAGCTGTAGTGTACGCAACAAGAGTTCCAGAGCG GTGGATGCCTGGGAAATGTGACCTTGCAGGCCACAGTCACCAAGTTTTCCACGTGCTAGTGGTGGCTGGAGCTTATGCCCATTACCGGGCAGGACTTGTT TACCTAAAATGGAGAGGCCTCCACGGATGCTAA
AA sequence Show only first row Show all	>Lus10011713 pacid=23145611 polypeptide=Lus10011713 locus=Lus10011713.g ID=Lus10011713.BGIv1.0 annot-version=v1.0 MDLGSDEHTESAENDQLVSSDIRSEMATENHQDTFSRGKGQRLWKKVKYQLVEYHSLPAYLRDNEYIHGYYRAEWPLKQILLSIFTIHNETLNVWTHLIG FFLFLSLTIYTAIKVPNVHLHSMHLPDALKADLHKLHSCLPSLPHMPDLHRLRDELKTTLPSMDFSGWHVTELLYNCLPERFSHVNHTDVCRLRSMTDDV GNMIAPLMVRPITRWPFFAFMGGAMFCLLASSICHLFSCHSERMAYIMLRVDYAGIAALIATSFYPPVYYSFMCNPFFCNLYLGFITLFGITTVLFSLLP VFQNPEWRIVRASLFSFMGLSGAAPILHKLILFWHQPEALHTTGYELLMGFFYGLGAVVYATRVPERWMPGKCDLAGHSHQVFHVLVVAGAYAHYRAGLV YLKWRGLHGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10011713 [exp]	0	1
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10012284 [exp]	1.4	0.9159
AT4G35320			unknown protein		Lus10026561 [exp]	1.4	0.9211
AT3G02300			Regulator of chromosome conden...		Lus10013197 [exp]	2.2	0.9015
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	3.0	0.9051
AT4G38660			Pathogenesis-related thaumatin...		Lus10041899 [exp]	4.4	0.8698
AT5G17820			Peroxidase superfamily protein...		Lus10001324 [exp]	5.5	0.8964
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	7.3	0.8905
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	8.0	0.9049
AT5G52360		ADF10	actin depolymerizing factor 10...		Lus10027474 [exp]	8.0	0.8467
AT5G42200			RING/U-box superfamily protein...		Lus10034551 [exp]	8.7	0.8564

Compare expression of checked genes

Lus10011713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.