Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65890 515 / 0 ACR1 ACT domain repeat 1 (.1.2) AT1G76990 405 / 4e-138 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT5G25320 391 / 7e-132 ACT-like superfamily protein (.1) AT1G69040 380 / 2e-128 ACR4 ACT domain repeat 4 (.1.2) AT3G01990 357 / 1e-119 ACR6 ACT domain repeat 6 (.1) AT2G03730 355 / 2e-118 ACR5 ACT domain repeat 5 (.1.2) AT4G22780 339 / 3e-112 ACR7 ACT domain repeat 7 (.1) AT1G12420 331 / 2e-109 ACR8 ACT domain repeat 8 (.1) AT2G39570 51 / 1e-06 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT2G36840 44 / 0.0002 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028646 [exp] 409 / 1e-139 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 411 / 2e-137 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10003136 [exp] 387 / 5e-131 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 382 / 7e-129 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10036827 [exp] 380 / 1e-128 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10041543 [exp] 374 / 4e-126 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 374 / 6e-126 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10019191 [exp] 204 / 4e-62 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 193 / 2e-56 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G006500 [exp] 693 / 0 AT5G65890 567 / 0.0 ACT domain repeat 1 (.1.2) Potri.014G006700 [exp] 659 / 0 AT5G65890 540 / 0.0 ACT domain repeat 1 (.1.2) Potri.005G185600 [exp] 393 / 1e-133 AT1G76990 709 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.002G074800 [exp] 392 / 5e-133 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.006G256500 [exp] 390 / 8e-132 AT5G25320 611 / 0.0 ACT-like superfamily protein (.1) Potri.010G138600 [exp] 388 / 2e-131 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 386 / 9e-131 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 385 / 6e-130 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.018G025500 [exp] 385 / 9e-130 AT5G25320 604 / 0.0 ACT-like superfamily protein (.1) Potri.001G327000 [exp] 362 / 3e-121 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10011715 pacid=23145616 polypeptide=Lus10011715 locus=Lus10011715.g ID=Lus10011715.BGIv1.0 annot-version=v1.0 ATGGAGATTGGCTACCAGCCATACATTGATCCCGATTTCGAATCACTAATCGAAAGAATCTACCCTCCCAGGGTTTGTATTGACAACGACACATACCCAG ATTGCACGCTTGTTAAGGTTGATAGTGCAAACAAGCATGGGATTCTGTTAGAGCTAGTTCAAGTGTTGACAGATCTCGATCTCCTCATTTCCAAGTCTTA CATCTCCTCCGACGGCGGCTGGTTCATGGATGTGTTCCACGTGACGGATCAGCTTGGGAACAAACTCACTGACGAAACTCTCATTCTCTACATCCAACAG GCAATTTGTGCTAGTAGGAGGGGATCAGGAATCTCCAAGGACTTGCAGTTACAGTTACACCCCTCTTATTTTAAAAAAGATCTCCGGCCACGCCACGTGT CATCAGAGAACACGGCCTTGGAAATCACAGGGATCGACCGCCCCGGTCTGTTATCCGAAATATCAGCAGTGTTGGCCGAGCTGCACTGCCACATCACCGC TGCGGTGGCATGGACCCACAACAAGCGGGCTGCAATGATCATCTACGTGGAGGAAGGGATGAGGGGAGGCGCTGTGGTTGAGTCGAGGAGGCTGGCACAC GTTCAGGAACAGTTGGAAATGGTGGTGGAGGCCCACCATGGTATGGGGGAGATGATGAGCGTCAGGCTAACAGATCCCGGTGCGGGTAGGACCCACACGG AGAGGCGGCTCCACCAGCTGCTCTGTGCTGACATGGACTATAAGCCTTGCAAAGGGTGCAATGCTGGAGTCAAGAATAATCATAGGAAGGACTGTACCAA GATTCATGTGAGCATTGAGCCATGTCAGGAGAAGGGCTACTCTGTTGTGAATGTGAGGAGTAGAGATCGACCCAAGCTACTCTTTGATACTGTTTGTGCG TTGACTGATATGGAGTACGTTGTTTTCCACGCCGCCGTCAGCTCCTTGGGCACCTTGGCCGATCAGGAGTACTACATAAGGCAAAAGGATGGGTGCACTT TGGAGACGGAAAGTGAGAGGCATAGGCTGAGCCAATGCTTGATTGCTGCGATTGAACGCAGGGTTTGCGATGGGTTAAGGTTGGATATATGCACAATGGA CAGAAAGGGGCTGCTATCAGACGTGACAAGGGCGTTCAGGGAGAACGGATTATCGATAGCGAGAGCAGAGATTGGAAGGCATGGGGAGACAGCTATCGGG ACATTTTATGTGACGGAGGCATCAGGAAATTGCGTGAGCCAACACACAGTGGAGTTGGTGAAGAAAGATCTAGGGGAGTCACTAGTAGTGGTTAACAACT ACTCGTGCTGGAATAGTGATCAGATCAAGTCCCCTAGTTGGAGTAGCAGCGCAAGTAGTGCTAATGATAACAAACCAAGGTTCTCGCTGGGGACATTGTT CTGGTCTCAATTGGGTTGGCTTTCAGGCAACTTTGGATCATCTGTTCGCTCTTGA
AA sequence Show only first row Show all	>Lus10011715 pacid=23145616 polypeptide=Lus10011715 locus=Lus10011715.g ID=Lus10011715.BGIv1.0 annot-version=v1.0 MEIGYQPYIDPDFESLIERIYPPRVCIDNDTYPDCTLVKVDSANKHGILLELVQVLTDLDLLISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQ AICASRRGSGISKDLQLQLHPSYFKKDLRPRHVSSENTALEITGIDRPGLLSEISAVLAELHCHITAAVAWTHNKRAAMIIYVEEGMRGGAVVESRRLAH VQEQLEMVVEAHHGMGEMMSVRLTDPGAGRTHTERRLHQLLCADMDYKPCKGCNAGVKNNHRKDCTKIHVSIEPCQEKGYSVVNVRSRDRPKLLFDTVCA LTDMEYVVFHAAVSSLGTLADQEYYIRQKDGCTLETESERHRLSQCLIAAIERRVCDGLRLDICTMDRKGLLSDVTRAFRENGLSIARAEIGRHGETAIG TFYVTEASGNCVSQHTVELVKKDLGESLVVVNNYSCWNSDQIKSPSWSSSASSANDNKPRFSLGTLFWSQLGWLSGNFGSSVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	0	1
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	1.0	0.8792
AT5G08350			GRAM domain-containing protein...		Lus10010167 [exp]	1.4	0.8712
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	2.0	0.8576
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10011718 [exp]	2.2	0.8508
AT5G08350			GRAM domain-containing protein...		Lus10013445 [exp]	4.6	0.8615
AT3G11680			Aluminium activated malate tra...		Lus10013577 [exp]	5.1	0.7810
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	5.2	0.8033
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10042774 [exp]	6.3	0.7876
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	7.0	0.8244
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	9.2	0.8417

Compare expression of checked genes

Lus10011715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.