Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49790 247 / 4e-79 Carbohydrate-binding protein (.1) AT1G59510 236 / 2e-74 CF9 Carbohydrate-binding protein (.1) AT1G10150 226 / 4e-70 ATPP2-A10 Carbohydrate-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039651 [exp] 542 / 0 AT1G10150 298 / 2e-98 Carbohydrate-binding protein (.1) Lus10003785 [exp] 284 / 7e-93 AT1G10150 447 / 1e-156 Carbohydrate-binding protein (.1) Lus10012487 [exp] 282 / 4e-92 AT1G10150 439 / 2e-153 Carbohydrate-binding protein (.1) Lus10007727 [exp] 278 / 8e-91 AT1G10150 429 / 1e-149 Carbohydrate-binding protein (.1) Lus10018663 [exp] 235 / 7e-75 AT1G10150 342 / 2e-116 Carbohydrate-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G006600 [exp] 311 / 2e-103 AT1G10150 355 / 8e-120 Carbohydrate-binding protein (.1) Potri.014G006800 [exp] 298 / 3e-98 AT1G10150 350 / 5e-118 Carbohydrate-binding protein (.1) Potri.014G014100 [exp] 273 / 1e-88 AT1G10150 401 / 3e-138 Carbohydrate-binding protein (.1) Potri.002G116400 [exp] 273 / 2e-88 AT1G10150 387 / 1e-132 Carbohydrate-binding protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011718 pacid=23145632 polypeptide=Lus10011718 locus=Lus10011718.g ID=Lus10011718.BGIv1.0 annot-version=v1.0 ATGGACTTGGGTTTGGTCAAGAAAACAGGTCTCCTCGATTACACTCGCAAAAACAGGAGCTGGGTTGTCTTATTGGCAGCTGCTTTCTCTTCCTACGCCG CATATAAAGTCTACAACTCGACTTCCCTTTTCAGGAAACGCACTAGGTTCCTTCAGCTTCTCAGAGCTTTCTTTTCAATGGCGGATGCAATCTCCCATTC CGCCGAAACAATCTCCGTCGTCTCAAAGGAATTGAAACACTTCCTCCAATCCGAATCCGACCAACTCCCCAACAGCTTGAACCAAATGACCAAACTCGCC AGGTCAGACGAGTTCTCCCAGTCTGTCGTCGTAATCACCAAAGCCCTAACCATCGGAATCTTGAGTGCACACCAATCCAATTCCAATTCCAATTCCAATT CCGATTCCAATCCAGGATTCTTAGAAAACGTAATCGACAAGCTCTCAACTCCATCCGGGTGCGGATTCGTTTCTTCAATCGCCGGTAGCTTCGCCAGAAA CTTGGTCAAGGCCTATTACGACTGCTCCTCGAAACAGGGGATCAGCAGCAGCTCTGGTTCGGAATTGATGGAGTTGATCTGCAGCCCTAAAAGTAAATCC CTAATCGCGGACTGCACTCAGATGTTCGTGAGCACGGCCGTCACCGTCTACCTAGAGAAAACTCTTCACATCAACCCCTACAACCAGCTCTTCGCTGGAT TGACCGATCCAAAGCACGATAAGCAAGTGAAAGATCTGGTGATTTTGGTGAGCAATTCCGCAATTGCAACGCTGGTGAAATCGTCTCACTCTGCACTGAC ATCTCCGGAGGACTATCCTGATAAATGGGAGGGTGGAGGCGGAGGAGGAGACTGGGTGGAGAAAGTGTCGTCGACGCTGGCGATGCCGAGTAACAGGAAG CTAGTGGTGGATGTGACCGGTAAAGTAACATTCGAGACTGTTAGGTCGGTGCTGGAATTTGTTGTGGAGAGGTTAAGAGACGGGGTAAAGGAATGCGTGG AGGTGGTTGAAGAAATGGTGGTGGAAGGTGGGTTTGAAGCTGTCAGCTACGTGACGGCGAAATCGTTTGCTGTTACTGATTTATGTCTTTCTGTATTCCT GGATGTGTTGGATTCTGCAACCTGGATTCTTATTCCTGCTTGA
AA sequence Show only first row Show all	>Lus10011718 pacid=23145632 polypeptide=Lus10011718 locus=Lus10011718.g ID=Lus10011718.BGIv1.0 annot-version=v1.0 MDLGLVKKTGLLDYTRKNRSWVVLLAAAFSSYAAYKVYNSTSLFRKRTRFLQLLRAFFSMADAISHSAETISVVSKELKHFLQSESDQLPNSLNQMTKLA RSDEFSQSVVVITKALTIGILSAHQSNSNSNSNSDSNPGFLENVIDKLSTPSGCGFVSSIAGSFARNLVKAYYDCSSKQGISSSSGSELMELICSPKSKS LIADCTQMFVSTAVTVYLEKTLHINPYNQLFAGLTDPKHDKQVKDLVILVSNSAIATLVKSSHSALTSPEDYPDKWEGGGGGGDWVEKVSSTLAMPSNRK LVVDVTGKVTFETVRSVLEFVVERLRDGVKECVEVVEEMVVEGGFEAVSYVTAKSFAVTDLCLSVFLDVLDSATWILIPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10011718 [exp]	0	1
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	2.2	0.8508
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	3.2	0.8141
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10013446 [exp]	4.9	0.7853
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	6.9	0.7834
AT5G08350			GRAM domain-containing protein...		Lus10010167 [exp]	7.4	0.7851
AT4G13020		MHK	Protein kinase superfamily pro...		Lus10003155 [exp]	11.0	0.7979
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10001548 [exp]	14.4	0.7710
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	17.3	0.7617
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10007726 [exp]	17.7	0.6889
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10019604 [exp]	18.7	0.7197

Compare expression of checked genes

Lus10011718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.