Plant FIBer expression Database

Lus10011719 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65880 40 / 4e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039652
[exp]
77 / 1e-19 AT5G65880 52 / 3e-11 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G006700
[exp]
60 / 7e-13 AT5G65880 / unknown protein
Potri.014G006850
[exp]
39 / 5e-05 AT5G65880 49 / 7e-10 unknown protein
PFAM info
Representative CDS sequence
>Lus10011719 pacid=23145621 polypeptide=Lus10011719 locus=Lus10011719.g ID=Lus10011719.BGIv1.0 annot-version=v1.0
ATGCTCCCGAGGTGGGACAATCCCGAGGCCAATACTAACTATCATGCTCTAGCGCTTGTCCACTCGAACTTCTCTAGGGCCTTCACTTTACTCTTCGCGG
TGTGGAGCTTGATGTTTGATAAGATTCATAAGTCCAGACTGTGTGTCCCACTCCCGCTAGACTGTGCCTACCTGATGGCTCCTTTCGCCGGAATGGACTG
GCACAAAGATATGGATGAAATTCAACATCACCACCATCGTCCTCAAACTGGTCTCCATCAGACGAAATCTGGTGATCATGGTTGTCTGAGTCATATCGAA
TATCATCGATATTTGGTGATAAACGGGTTCCTACTTTGGGCGGCCGAAATCTTCAACGGTGTTGGAATAATTTCTGGGAAGGCGTTGTTTGGGCAACCAC
TTGATGATTACTGGAAAAAGAAGCTCCAGGAAGAAGCAGCTGCAAAAGATACTGATGCAAAGAACTCAACAAATTAA
AA sequence
>Lus10011719 pacid=23145621 polypeptide=Lus10011719 locus=Lus10011719.g ID=Lus10011719.BGIv1.0 annot-version=v1.0
MLPRWDNPEANTNYHALALVHSNFSRAFTLLFAVWSLMFDKIHKSRLCVPLPLDCAYLMAPFAGMDWHKDMDEIQHHHHRPQTGLHQTKSGDHGCLSHIE
YHRYLVINGFLLWAAEIFNGVGIISGKALFGQPLDDYWKKKLQEEAAAKDTDAKNSTN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G65880 unknown protein Lus10011719
[exp]
0 1
AT5G35750 AHK2 histidine kinase 2 (.1) Lus10006370
[exp]
5.7 0.8731
AT5G67530 ATPUB49 plant U-box 49 (.1) Lus10007794
[exp]
6.4 0.8390
AT3G54720 MFO1, HPT, COP2... PRIMORDIA TIMING, Multifolia, ... Lus10017223
[exp]
8.3 0.8466
AT5G47840 AMK2 adenosine monophosphate kinase... Lus10009477
[exp]
9.9 0.8426
AT1G03620 ELMO/CED-12 family protein (.1... Lus10039805
[exp]
13.2 0.8889
AT4G36800 RCE1 RUB1 conjugating enzyme 1 (.1.... Lus10026038
[exp]
17.0 0.8670
Lus10012330
[exp]
19.0 0.8391
AT4G24820 26S proteasome, regulatory sub... Lus10017932
[exp]
20.1 0.8377
AT1G27170 transmembrane receptors;ATP bi... Lus10015453
[exp]
20.4 0.7976
AT5G44280 ATRING1A ARABIDOPSIS THALIANA RING 1A, ... Lus10039845
[exp]
25.1 0.8646

Lus10011719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.