Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49780 54 / 2e-10 ATPSK3(FORMERSYMBOL), ATPSK3(FORMERSYMBOL), ATPSK4, ATPSK3(FORMERSYMBOL), ATPSK3(FORMERSYMBOL), ATP phytosulfokine 4 precursor (.1) AT2G22860 48 / 6e-08 ATPSK2 phytosulfokine 2 precursor (.1) AT5G65870 45 / 3e-07 ATPSK5 phytosulfokine 5 precursor (.1) AT4G37720 43 / 3e-06 ATPSK6, ATPSK4 phytosulfokine 6 precursor (.1) AT1G13590 37 / 0.0005 ATPSK1 phytosulfokine 1 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019272 [exp] 40 / 5e-05 ND 34 / 0.004 Lus10027716 [exp] 40 / 9e-05 AT3G44735 57 / 4e-12 PHYTOSULFOKINE 3 PRECURSOR (.1.2) Lus10020548 [exp] 37 / 0.0003 AT3G44735 55 / 8e-12 PHYTOSULFOKINE 3 PRECURSOR (.1.2) Lus10035572 [exp] 37 / 0.0006 AT3G44735 54 / 4e-11 PHYTOSULFOKINE 3 PRECURSOR (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G006800 [exp] 57 / 2e-11 AT3G49780 60 / 1e-13 phytosulfokine 4 precursor (.1) Potri.009G085600 [exp] 55 / 7e-11 AT3G49780 68 / 1e-16 phytosulfokine 4 precursor (.1) Potri.014G006900 [exp] 54 / 2e-10 AT2G22860 52 / 2e-10 phytosulfokine 2 precursor (.1) Potri.002G116300 [exp] 50 / 5e-09 AT2G22860 50 / 5e-10 phytosulfokine 2 precursor (.1) Potri.014G014000 [exp] 45 / 3e-07 AT3G49780 69 / 2e-17 phytosulfokine 4 precursor (.1) Potri.009G148900 [exp] 42 / 1e-05 AT3G44735 65 / 2e-15 PHYTOSULFOKINE 3 PRECURSOR (.1.2) Potri.004G188200 [exp] 39 / 0.0002 AT3G44735 69 / 9e-17 PHYTOSULFOKINE 3 PRECURSOR (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06404 [flax] [poplar] PSK Phytosulfokine precursor protein (PSK)
Representative CDS sequence Show only first row Show all	>Lus10011721 pacid=23145636 polypeptide=Lus10011721 locus=Lus10011721.g ID=Lus10011721.BGIv1.0 annot-version=v1.0 ATGAGAATGAGGGATCCCAACTCTCGATTGCAGTGTCCTCTCGACTCCATCATACTTGCGTCGGGATGCAATCACACATCGATCAATTCCCTCATTCTAA GTTCGATGTGGAAATTCCATCGGGATCCTGGAGACGAACGGCTCCCAAGTAAGGGGTTAAAGGCTTTACGAGTGATGCCATATCAGGTGTGTGAAGAACC CAGCGGGTTCGCTCTTCTAGTTGATCGAGCAATGTGTGCGGTTCTTAGTGATCCTGCGATGATGGAAATGGTGACCGCTCCTGCAAAACAACAAGGTATC GCTGTGGAAGGGCATGACTCGGACGAGCAGGATTTGTGCGTAGGTATTGGAGAAGACGACTGCTTGAACAGAAGGACTCTTGCCGCTCATCTTGATTACA TTTACACCCAGAAACATGATAAGCCTTGA
AA sequence Show only first row Show all	>Lus10011721 pacid=23145636 polypeptide=Lus10011721 locus=Lus10011721.g ID=Lus10011721.BGIv1.0 annot-version=v1.0 MRMRDPNSRLQCPLDSIILASGCNHTSINSLILSSMWKFHRDPGDERLPSKGLKALRVMPYQVCEEPSGFALLVDRAMCAVLSDPAMMEMVTAPAKQQGI AVEGHDSDEQDLCVGIGEDDCLNRRTLAAHLDYIYTQKHDKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	0	1
					Lus10021407 [exp]	1.4	0.9818
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017345 [exp]	3.2	0.9668
					Lus10025782 [exp]	3.5	0.9655
AT1G69630			F-box/RNI-like superfamily pro...		Lus10011410 [exp]	5.0	0.9593
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	5.3	0.9615
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	6.9	0.9536
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10043327 [exp]	7.4	0.9381
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	7.7	0.9359
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	7.9	0.9531
AT2G04305			Magnesium transporter CorA-lik...		Lus10035643 [exp]	8.4	0.9235

Compare expression of checked genes

Lus10011721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.