Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49760 82 / 1e-19 bZIP ATBZIP5 basic leucine-zipper 5 (.1) AT2G22850 69 / 4e-14 bZIP ATBZIP6 basic leucine-zipper 6 (.1.2) AT3G62420 52 / 9e-09 bZIP ATBZIP53 basic region/leucine zipper motif 53 (.1) AT4G37730 54 / 2e-08 bZIP ATBZIP7 basic leucine-zipper 7 (.1) AT1G13600 52 / 4e-08 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT2G18160 49 / 2e-07 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT3G30530 49 / 4e-07 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT2G04038 48 / 5e-07 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT5G15830 48 / 8e-07 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT4G34590 47 / 1e-06 bZIP ATB2, ATBZIP11, BZIP11, GBF6 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019273 [exp] 112 / 7e-31 AT2G22850 94 / 2e-23 basic leucine-zipper 6 (.1.2) Lus10011557 [exp] 94 / 1e-24 AT3G49760 87 / 9e-23 basic leucine-zipper 5 (.1) Lus10018662 [exp] 55 / 1e-09 AT3G49760 82 / 2e-20 basic leucine-zipper 5 (.1) Lus10010005 [exp] 55 / 2e-09 AT3G62420 164 / 1e-52 basic region/leucine zipper motif 53 (.1) Lus10007726 [exp] 54 / 4e-09 AT3G49760 84 / 3e-21 basic leucine-zipper 5 (.1) Lus10025024 [exp] 54 / 6e-09 AT3G62420 161 / 9e-52 basic region/leucine zipper motif 53 (.1) Lus10013059 [exp] 54 / 1e-08 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10040428 [exp] 53 / 1e-08 AT1G75390 148 / 8e-46 basic leucine-zipper 44 (.1.2) Lus10029101 [exp] 53 / 3e-08 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G006900 [exp] 110 / 4e-30 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.014G007100 [exp] 107 / 5e-29 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1) Potri.004G111100 [exp] 58 / 2e-10 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.017G106700 [exp] 57 / 5e-10 AT3G30530 169 / 1e-53 basic leucine-zipper 42 (.1) Potri.014G013400 [exp] 56 / 5e-10 AT1G59530 77 / 8e-19 basic leucine-zipper 4 (.1) Potri.005G119300 [exp] 55 / 1e-09 AT2G18160 130 / 3e-39 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) Potri.008G113400 [exp] 54 / 4e-09 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1) Potri.009G119700 [exp] 54 / 5e-09 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.010G135200 [exp] 54 / 9e-09 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.004G158200 [exp] 52 / 2e-08 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10011722 pacid=23145640 polypeptide=Lus10011722 locus=Lus10011722.g ID=Lus10011722.BGIv1.0 annot-version=v1.0 ATGCTGTCCGCTATTCCGGTCACCCTCCCCGCCTGCTCGATGCTCGGAGACTCCTCGTTTCCTTGCTTCGACTATGGCTTCCCTTCGTGGGACCCGGAAC AGGAATACTACTCCCCAGCTACTGTGAGTGACATGCTCGTCTTTCCTGACGACCATGTCATCATCACGCCACTACTTACTTCTTCCCCTGAATCCGGAAC TGCCGGTTCCGAACTCGACCAGAAACCCGTTGACTCACTTACCACCACCACCACCACCGTCGGATCGGACGGCGTTGACCCAGGGCCGACGTCGGTGATG GATGAGCGTAAGCGGAGGAGGATGATATCCAACAGGGAATCTGCTCGGAGGTCGAGAATGAGAAAACAGAGGCACTTAGAAAACTTACGCAACCAGCTGA ACCGACTTAGGCTTGAGAACCGGGAGCTAACCAACCGCCTGCGGTTCGTTTCGTACTATTGCCACCTCGTAAGGACCGACAACGACCGGCTCCAGTCCGA ACACTCCATGCTCCGCCGCAAACTATCCAACATCCGCCAAATCCTGATGTTTCGCCAGTTCTCTGCTGCTGCATGCAATAACATAATCAACGCAGCAGAA CAATTCCCATCCTTAGTCACTTCATAA
AA sequence Show only first row Show all	>Lus10011722 pacid=23145640 polypeptide=Lus10011722 locus=Lus10011722.g ID=Lus10011722.BGIv1.0 annot-version=v1.0 MLSAIPVTLPACSMLGDSSFPCFDYGFPSWDPEQEYYSPATVSDMLVFPDDHVIITPLLTSSPESGTAGSELDQKPVDSLTTTTTTVGSDGVDPGPTSVM DERKRRRMISNRESARRSRMRKQRHLENLRNQLNRLRLENRELTNRLRFVSYYCHLVRTDNDRLQSEHSMLRRKLSNIRQILMFRQFSAAACNNIINAAE QFPSLVTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011722 [exp]	0	1
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	1.7	0.9215
AT4G22990			Major Facilitator Superfamily ...		Lus10009314 [exp]	3.5	0.8586
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10037471 [exp]	3.9	0.8572
AT1G20225			Thioredoxin superfamily protei...		Lus10021843 [exp]	4.0	0.8155
AT1G49230			RING/U-box superfamily protein...		Lus10005815 [exp]	4.2	0.8520
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	4.7	0.8834
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10039869 [exp]	5.8	0.7764
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	6.2	0.8182
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	6.7	0.8695
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	8.8	0.8513

Compare expression of checked genes

Lus10011722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.