Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G007000 [exp] 84 / 7e-21 ND / Potri.014G013000 [exp] 40 / 0.0002 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011724 pacid=23145617 polypeptide=Lus10011724 locus=Lus10011724.g ID=Lus10011724.BGIv1.0 annot-version=v1.0 ATGGGAAACCACAGAAAGAGCTGTTCACAAGGGAGCATCCCCTTCTCATGGGAGGATTCCCCTGGAGTTTCCAAATCCATCCACCCCACCCCACCGCCTC TATCTCCGCGCCGCCGGTCCATATCAGTCCCCACATTCACTGTCGATGATTCAGCCCGCAACAAGGAGAAGAAGATGAAGATGAATAGTGACAATCATAA TCGCAGCCTTCCTCCGCCTCCTCCTTCAAGCAGTACCAAATTGCAAAGGGGAAGCTTGTCTGGTAAAACGGCGACGTTTGGGAGGTGTGGAGTTGAGGAC CCTTTCCTAGCTGCCTACAAAGAGTGTACCAAAGATCGATTTCGGTGGTGGAAGCTTACTAATCCGAACAAAACCATCTTTAATTGTGGATTATTGGGTA GTAGAAACAAGTTGGTGTTTTCATGCAAGAATGCTTGTGATGTGGAGGAAGGTAGCTTGGTGGCTAGGCTGGCTAATCTACCTCTCTTTCACGACGATAA TACACTTCCGAAGAGATGA
AA sequence Show only first row Show all	>Lus10011724 pacid=23145617 polypeptide=Lus10011724 locus=Lus10011724.g ID=Lus10011724.BGIv1.0 annot-version=v1.0 MGNHRKSCSQGSIPFSWEDSPGVSKSIHPTPPPLSPRRRSISVPTFTVDDSARNKEKKMKMNSDNHNRSLPPPPPSSSTKLQRGSLSGKTATFGRCGVED PFLAAYKECTKDRFRWWKLTNPNKTIFNCGLLGSRNKLVFSCKNACDVEEGSLVARLANLPLFHDDNTLPKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011724 [exp]	0	1
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	1.0	0.9882
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	3.2	0.9824
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	4.2	0.9834
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	4.2	0.9830
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	4.6	0.9812
AT1G18265			Protein of unknown function, D...		Lus10007082 [exp]	4.8	0.9731
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	5.1	0.9791
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10025593 [exp]	5.2	0.9805
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	5.3	0.9828
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10043326 [exp]	8.0	0.9808

Compare expression of checked genes

Lus10011724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.