Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042586 [exp] 57 / 2e-10 ND / Lus10015577 [exp] 55 / 8e-10 ND / Lus10008292 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011725 pacid=23145635 polypeptide=Lus10011725 locus=Lus10011725.g ID=Lus10011725.BGIv1.0 annot-version=v1.0 ATGCAAGCCAAACCTCACGGATTTTTAATCTTGTCGCCGGATTTCTCGGATGCTGGCACTTCCAAGCAGAAGGCTACCTATAGCAAACCACTCCCGTCGA TTTTCCATACCTATGTCACGGTAGATGCTTTGGATGCTGTTGGTTTGTCAGGTGGTCAGAATGCTGCTGTTCCCAACGACTCTGTCTCTGCTTTAGTTCT TGATACTAACAATCTAATGGCTGATGCTCTGTTGTCATCGGCAGTTTTCGCAACTTTTTTTATTACGGCTTGGAATTGTCGGGGATTGGGTGGATCCCTG GTTAAAGATACTCTCCAAAACATCTCAACCCGCTACCATCCTCTGTTTCTTTTCCTGGCTGAGACGAAGGCTACTACTGATGGGGTCGATCAATTGCTCC ATTCTCTCCACTTTCCAACTGATAATCATTATATCACTGAATGTAATACTGAGTATGCTGGTGGTTTAGCTGTTGCTTGGATTGCTGATATTGATGTTCA TTTGATCTTTGCACACTACAACAAAACGCGCTTGTTGTGGGGGTTCCGTAGTAGGGGTTGTACAACTACCACAATAGATTCGGATATCCGCATCCGTTCT TGCGGTTATAGGAACGGTGAAAACGGAGTTTGA
AA sequence Show only first row Show all	>Lus10011725 pacid=23145635 polypeptide=Lus10011725 locus=Lus10011725.g ID=Lus10011725.BGIv1.0 annot-version=v1.0 MQAKPHGFLILSPDFSDAGTSKQKATYSKPLPSIFHTYVTVDALDAVGLSGGQNAAVPNDSVSALVLDTNNLMADALLSSAVFATFFITAWNCRGLGGSL VKDTLQNISTRYHPLFLFLAETKATTDGVDQLLHSLHFPTDNHYITECNTEYAGGLAVAWIADIDVHLIFAHYNKTRLLWGFRSRGCTTTTIDSDIRIRS CGYRNGENGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011725 [exp]	0	1
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10035822 [exp]	2.0	0.9107
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10036604 [exp]	2.4	0.8796
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10020764 [exp]	2.6	0.8607
AT1G78840			F-box/RNI-like/FBD-like domain...		Lus10008295 [exp]	2.8	0.8670
AT5G16030			unknown protein		Lus10017573 [exp]	6.0	0.8542
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10023499 [exp]	7.4	0.8080
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041655 [exp]	8.3	0.8768
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10005140 [exp]	10.3	0.8092
AT4G34760			SAUR-like auxin-responsive pro...		Lus10012189 [exp]	10.6	0.8440
AT4G34760			SAUR-like auxin-responsive pro...		Lus10007553 [exp]	18.5	0.8328

Compare expression of checked genes

Lus10011725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.