Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65840 297 / 9e-102 Thioredoxin superfamily protein (.1) AT2G37240 96 / 1e-23 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014017 [exp] 93 / 2e-22 AT2G37240 316 / 1e-109 Thioredoxin superfamily protein (.1) Lus10019900 [exp] 60 / 1e-10 AT2G37240 214 / 7e-70 Thioredoxin superfamily protein (.1) Lus10029111 [exp] 47 / 9e-06 AT2G37240 61 / 2e-10 Thioredoxin superfamily protein (.1) Lus10013051 [exp] 43 / 0.0001 AT2G37240 60 / 4e-10 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G012100 [exp] 337 / 2e-117 AT5G65840 321 / 7e-111 Thioredoxin superfamily protein (.1) Potri.007G007201 [exp] 109 / 8e-31 AT5G65840 101 / 7e-28 Thioredoxin superfamily protein (.1) Potri.006G133100 [exp] 94 / 8e-23 AT2G37240 325 / 6e-113 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00578 [flax] [poplar] AhpC-TSA AhpC/TSA family
Representative CDS sequence Show only first row Show all	>Lus10011727 pacid=23145638 polypeptide=Lus10011727 locus=Lus10011727.g ID=Lus10011727.BGIv1.0 annot-version=v1.0 ATGATAGTCCTACAGTCTTCTCCCCTACTCACTCTTCCCATTCAAATTCTCCCCAGATTTCATCATCCCCGATTCCCGTCAAGGGCCGCCGCAATAACAA AACCCGCCGGACCCCTCATCGGATTCTGTATGGCCTCTCCTCCTGCGGTTCAGAGGGTGCTTCCTGTTTCGGCCCAATCTTCTTATAGTGGCAATTTCAG CTCGACTACTATCGGAGAATTGCTGAGTGAAGTCAGTGTCTTCAAGGCTTCTGGTGAAGCCGTTGTGTTCAAGGATCTCTGGGACCAGAACGGGGGAATG GCTGTTGTTGCGCTGTTGAGACACTTTGGATGCCCTTGCTGTTGGGAATTGGCGTCAGAGTTGAAGGAAGCTAAATCAAAATTTGAGTCAGCTGGGGTGA AACTCATTGCAATTGGTGTTGGTGAGCCCAAGAAAGCACTCTTGTTTGCAGAAAGGTTACCCTTCCCGGTGGACTGCCTTTATGCTGATCCAGATCGTAA GGCATATGATGTCTTGGGTTTATACTATGGTTTTGGACGAACATTCTTCAATCCAGCTAGTGCTAAGGTTTTATCAAGATTTGAAACCCTCCGGAAAGCT GTGAAAAACTATACAATTGAAGCAACACCAGATGATCGAAGTGGAGTCCTACAACAGGGAGGGATGTTTGTGTTCAAGGGGGAGGAGTTATTGTATGCAA GAAAAGATGAAGGGACAGGTGATCATGCTCCATTAAACGACATCATTGACATCTGCTGCCAAGTCTCAGTGGCTTGA
AA sequence Show only first row Show all	>Lus10011727 pacid=23145638 polypeptide=Lus10011727 locus=Lus10011727.g ID=Lus10011727.BGIv1.0 annot-version=v1.0 MIVLQSSPLLTLPIQILPRFHHPRFPSRAAAITKPAGPLIGFCMASPPAVQRVLPVSAQSSYSGNFSSTTIGELLSEVSVFKASGEAVVFKDLWDQNGGM AVVALLRHFGCPCCWELASELKEAKSKFESAGVKLIAIGVGEPKKALLFAERLPFPVDCLYADPDRKAYDVLGLYYGFGRTFFNPASAKVLSRFETLRKA VKNYTIEATPDDRSGVLQQGGMFVFKGEELLYARKDEGTGDHAPLNDIIDICCQVSVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65840			Thioredoxin superfamily protei...		Lus10011727 [exp]	0	1
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035696 [exp]	1.4	0.9478
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10000674 [exp]	2.8	0.9585
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028616 [exp]	3.5	0.9367
AT2G36895			unknown protein		Lus10023001 [exp]	4.5	0.9344
AT3G02690			nodulin MtN21 /EamA-like trans...		Lus10031371 [exp]	6.0	0.9226
AT4G40070			RING/U-box superfamily protein...		Lus10043426 [exp]	6.6	0.9333
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10011060 [exp]	6.7	0.9434
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10028299 [exp]	6.9	0.9427
AT2G46100			Nuclear transport factor 2 (NT...		Lus10036387 [exp]	7.2	0.9328
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10031474 [exp]	7.5	0.9288

Compare expression of checked genes

Lus10011727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.