Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26650 117 / 8e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 113 / 1e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 112 / 3e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47620 110 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT2G33410 107 / 2e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G07810 103 / 8e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G58470 100 / 2e-24 XF41, ATRBP1 RNA-binding protein 1 (.1) AT5G40490 96 / 2e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 92 / 3e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 92 / 5e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019276 [exp] 154 / 8e-45 AT4G14300 149 / 1e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10018657 [exp] 116 / 5e-30 AT1G58470 233 / 1e-73 RNA-binding protein 1 (.1) Lus10038806 [exp] 116 / 2e-29 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10007721 [exp] 115 / 4e-29 AT1G58470 222 / 6e-68 RNA-binding protein 1 (.1) Lus10000537 [exp] 115 / 4e-29 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 115 / 4e-29 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 114 / 2e-28 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 113 / 2e-28 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 112 / 2e-28 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258600 [exp] 121 / 1e-31 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 118 / 1e-30 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G115000 [exp] 114 / 2e-29 AT1G58470 219 / 7e-69 RNA-binding protein 1 (.1) Potri.006G015700 [exp] 114 / 7e-29 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 113 / 2e-28 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 111 / 7e-28 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 111 / 9e-28 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 108 / 8e-27 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G067500 [exp] 108 / 1e-26 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G161600 [exp] 107 / 3e-26 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10011728 pacid=23145614 polypeptide=Lus10011728 locus=Lus10011728.g ID=Lus10011728.BGIv1.0 annot-version=v1.0 ATGGTTTCTTCTCCTGCTAACTTGATGGCCATGGAAGGAGGAAAAAAACAACCGCGACCAAAACTGTTCGTGGGAGGACTTAACAATACAATAACAGGAC TTGTCCTACGGCAGCACTTCCAGGAGTATGGCCTAGTAAAAGATGCTTTTGTCGTTCAAGACAAGCAAATTAGACTGAGCCGAGGGTTTGGTTACGTGGA GTTTGAAGATCCATCAGCAGCTCATCATTCTCGCCAGCGCCAACACGTCATTCTTGAGAAAAAAGCTCAACCAAAGAAAAAGGGTAACCAGAACATCAAT ATCAATGGGGAGATGAGTGCGAGGGGAAAGAAGATCTTCGTCGGAGGCTTGCTGTCAACAACTACTGAATCGGAGTTTAGGAGTTTCTTTGAGAGATTTG GAGCAGTTAATGATGCGATTCTGGTTCATGATAAACAAAGCGGTAGACCAAGAGGGTTTGGCTTCATCACTTTTGAACCAGAGGATTCTGCAGATGGAGC TCTTGGAAAGAGATTTCACCAACTGAATGGCTCGGATGTAGAGGTGAAGAGGGCTAATCCTAAGGATAAAAGGACTACTACCGATCTCAGATACTACTAT GAATCAGTTCTAAATTATCATTACGTTTATGATTATTATCCTCATGGTTATTACTGGTATCACCATGCTCTGCCATTAAACTATCCGTATTATCTATTGT CTTCAAACTATGCAACTGACTTGTCCTACCAAAGCTATACTAAACTCCACACCGCCGGTGGGACAGACACCATGTGGCATCAACAAACAACAGACGGGGA GAATACTGCGGAAAAAAGCGGTAACTTGGTCTACTGA
AA sequence Show only first row Show all	>Lus10011728 pacid=23145614 polypeptide=Lus10011728 locus=Lus10011728.g ID=Lus10011728.BGIv1.0 annot-version=v1.0 MVSSPANLMAMEGGKKQPRPKLFVGGLNNTITGLVLRQHFQEYGLVKDAFVVQDKQIRLSRGFGYVEFEDPSAAHHSRQRQHVILEKKAQPKKKGNQNIN INGEMSARGKKIFVGGLLSTTTESEFRSFFERFGAVNDAILVHDKQSGRPRGFGFITFEPEDSADGALGKRFHQLNGSDVEVKRANPKDKRTTTDLRYYY ESVLNYHYVYDYYPHGYYWYHHALPLNYPYYLLSSNYATDLSYQSYTKLHTAGGTDTMWHQQTTDGENTAEKSGNLVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55550			RNA-binding (RRM/RBD/RNP motif...		Lus10011728 [exp]	0	1
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10037362 [exp]	6.0	0.7223
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002770 [exp]	11.7	0.7135
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10017898 [exp]	21.1	0.7419
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	26.0	0.6833
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10041576 [exp]	28.9	0.7229
AT2G34930			disease resistance family prot...		Lus10016344 [exp]	31.6	0.7084
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10019075 [exp]	37.9	0.6483
AT1G17665			unknown protein		Lus10006153 [exp]	37.9	0.6711
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10032395 [exp]	38.3	0.6004
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10015091 [exp]	42.0	0.6852

Compare expression of checked genes

Lus10011728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.