Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37760 763 / 0 SQE3 squalene epoxidase 3 (.1) AT1G58440 750 / 0 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G22830 733 / 0 SQE2 squalene epoxidase 2 (.1) AT5G24150 464 / 9e-160 SQP1, SQE5 SQUALENE MONOOXYGENASE 5, FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G24160 445 / 4e-152 SQE6 squalene monoxygenase 6 (.1) AT5G24140 416 / 1e-140 SQP2 squalene monooxygenase 2 (.1) AT5G24155 62 / 2e-11 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039649 [exp] 974 / 0 AT1G58440 791 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10007718 [exp] 798 / 0 AT1G58440 828 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10018654 [exp] 797 / 0 AT1G58440 827 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G007600 [exp] 828 / 0 AT4G37760 795 / 0.0 squalene epoxidase 3 (.1) Potri.002G114500 [exp] 790 / 0 AT1G58440 761 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.005G146700 [exp] 779 / 0 AT1G58440 766 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.015G120900 [exp] 755 / 0 AT1G58440 745 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014378 [exp] 593 / 0 AT1G58440 603 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014376 [exp] 592 / 0 AT1G58440 575 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G121136 [exp] 584 / 0 AT1G58440 564 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G120676 [exp] 162 / 3e-48 AT4G37760 170 / 5e-52 squalene epoxidase 3 (.1) Potri.015G121201 [exp] 134 / 2e-37 AT2G22830 132 / 4e-37 squalene epoxidase 2 (.1) Potri.012G121320 [exp] 53 / 2e-08 AT4G37760 54 / 2e-09 squalene epoxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01946 [flax] [poplar] Thi4 Thi4 family CL0063 [flax] [poplar] NADP_Rossmann PF08491 [flax] [poplar] SE Squalene epoxidase
Representative CDS sequence Show only first row Show all	>Lus10011732 pacid=23145619 polypeptide=Lus10011732 locus=Lus10011732.g ID=Lus10011732.BGIv1.0 annot-version=v1.0 ATGGCGGTTGCGGGGACCGAATCCTGCGTTATTTTGGGAGCTATACTCGCTCCCCTGATTGGGCTGGTTATCCTGTACCGCTTTTTGGGCAGCGGAGATG GTACAAAATTAGGTAATAAGAAGGGAGAGCCATTTAGGGGAGAAGCTCAGACGCGAAACGACGCTGGAGTTGTAGAATGGTCGGCGGATGCCGGTGCTGA CGTCATCGTCGTCGGAGCCGGAGTAGCTGGAGCTGCCCTAGCTCATACGCTTGGAAAGGATGGGAGGCGAGTTCTTGTTATAGAACGAGATCTGACGGAG CCTGACAGAATTGTTGGGGAGCTTCTTCAACCTGGAGGGTATCTTAAACTCATTGAACTTGGACTTCAGGATTGTGTGGAAGAGATTGATGCCCAGAGAG TTGTCGGATATGCTCTCATCAAGAATGGCAAGAGTACTAGACTTTCATATCCCTTGGAAAAGTTCCAGGAAGACGTTGCCGGGAGGAGCTTCCATAATGG GCGTTTCATTCGGAGGATGAGAGAAAAAGCTGCCACCCTCCCCAATGTCCGATTGCATCAAGGGACGGTGACTTCCTTACTTGAAGGAAACGGGGTGATT AAGGGGGTTCAATACAAAACTAAAGATGGGTTGGAACTTAAGGCTTATGCTCCTCTCACTGTCGTGTGTGATGGTTGCTTCTCGAATCTGAGACGCAACC TGTGCACGCCAAAGGTGGATGTGCCCTCTTGCTTTGTGGGTTTGATCCTAGAGAAGTGTCAACTTCCATTTGCAAATCATGGCCATGTCATTCTAGCAGA TCCATCACCAATTCTGTTTTACCCAATCAGCAGTACCGAAATCCGCTGTTTAGTTGATGTGCCTGGACAGAAAGTACCTTCAATTGGAAATGGTGAAATG GCCAAGTATTTGAAGGACGCTGTCGCCCCTCAGGTCCCGTCAGAACTTCGAGATGCCTTTGTATCAGCTGTAGACAAAGGTAATATCAGGACGATGCCTA ACCGAAGCATGCCTGCAAACCCACAACCAACGCCTGGAGCTCTTCTGATGGGTGATGCTTTCAATATGCGACATCCCTTAACTGGTGGCGGGATGACAGT TGCACTCTCTGATATCGTTGTCCTTCGGGATCTCCTCAAGCCACTTAGAGACTACCATGATGCGGCCTCCCTGACACAGTATCTCGAATCCTTCTACACC CTGCGCAAGCCTGTTGCTTCAACTATAAATACACTAGCAGGTGCCTTGTACAAGGTGTTCTCTGCTTCCCCTGATGAGGCAAGGAAAGAAATGCGTGAAG CTTGCTTCGACTATTTGAGCCTTGGAGGAATTTGTTCATCGGGGCCAGTGGCTTTGCTTTCTGGTTTAAACCCTCGCCCCTTGAGTTTAGTCCTCCATTT CTTTGCAGTTGCAATCTATGGCGTTGGTCGCTTGCTCCTTCCATTTCCTTCTCCTAAAGGTTTCTGGATTGGAGCTAGACTAATCACAAGCGCATCGGGT ATCATATTCCCGATAATCAAAGCAGAAGGAGTGAGGCAAATGTTCTTCCCTGCTACCGTACCAGCTGTCTATCGACCTCCTCCTGTCAATTGA
AA sequence Show only first row Show all	>Lus10011732 pacid=23145619 polypeptide=Lus10011732 locus=Lus10011732.g ID=Lus10011732.BGIv1.0 annot-version=v1.0 MAVAGTESCVILGAILAPLIGLVILYRFLGSGDGTKLGNKKGEPFRGEAQTRNDAGVVEWSADAGADVIVVGAGVAGAALAHTLGKDGRRVLVIERDLTE PDRIVGELLQPGGYLKLIELGLQDCVEEIDAQRVVGYALIKNGKSTRLSYPLEKFQEDVAGRSFHNGRFIRRMREKAATLPNVRLHQGTVTSLLEGNGVI KGVQYKTKDGLELKAYAPLTVVCDGCFSNLRRNLCTPKVDVPSCFVGLILEKCQLPFANHGHVILADPSPILFYPISSTEIRCLVDVPGQKVPSIGNGEM AKYLKDAVAPQVPSELRDAFVSAVDKGNIRTMPNRSMPANPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLRDYHDAASLTQYLESFYT LRKPVASTINTLAGALYKVFSASPDEARKEMREACFDYLSLGGICSSGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKGFWIGARLITSASG IIFPIIKAEGVRQMFFPATVPAVYRPPPVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	0	1
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	3.0	0.8884
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Lus10015688 [exp]	3.9	0.8871
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	4.5	0.8883
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10023505 [exp]	4.7	0.8543
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Lus10012718 [exp]	5.7	0.8635
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033741 [exp]	6.5	0.8685
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017391 [exp]	6.7	0.8631
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	6.9	0.8853
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	7.5	0.8681
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009961 [exp]	8.1	0.8812

Compare expression of checked genes

Lus10011732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.